miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 3' -60.5 NC_006151.1 + 91455 0.66 0.744281
Target:  5'- aCUGGUCCgGgGCCaGgGUCacguagaccuGCUCGCCg -3'
miRNA:   3'- gGACCAGG-CgCGGaCgUAG----------CGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 18700 0.66 0.744281
Target:  5'- --cGGgCgGCGCCgGCGUCGUgaCGCCg -3'
miRNA:   3'- ggaCCaGgCGCGGaCGUAGCGg-GUGG- -5'
29459 3' -60.5 NC_006151.1 + 37998 0.66 0.744281
Target:  5'- --gGcGUCCucgaGCGCCUGCugcccUGCCCGCUc -3'
miRNA:   3'- ggaC-CAGG----CGCGGACGua---GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 98001 0.66 0.744281
Target:  5'- gCgUGG-CCGCGUagGCggCGCCgGCCa -3'
miRNA:   3'- -GgACCaGGCGCGgaCGuaGCGGgUGG- -5'
29459 3' -60.5 NC_006151.1 + 48719 0.66 0.744281
Target:  5'- gCCcGGcCCGCGaaggGCA-CGCCCGCg -3'
miRNA:   3'- -GGaCCaGGCGCgga-CGUaGCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 86934 0.66 0.744281
Target:  5'- gCCUGGagucccagcUCgGCGCCaucGUcUCGgCCGCCa -3'
miRNA:   3'- -GGACC---------AGgCGCGGa--CGuAGCgGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 91353 0.66 0.738643
Target:  5'- --cGGUCCGcCGCCggucgaccuugagcGCGUCGagcacgCCGCCg -3'
miRNA:   3'- ggaCCAGGC-GCGGa-------------CGUAGCg-----GGUGG- -5'
29459 3' -60.5 NC_006151.1 + 81760 0.66 0.735813
Target:  5'- gCUGGUCCgcggGCGCCaccgggacgcgcucgGCG-CGCCCGUCg -3'
miRNA:   3'- gGACCAGG----CGCGGa--------------CGUaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 121261 0.66 0.735813
Target:  5'- uCCUGGcggCCGCGCUggcggagaucaacggGCGcgUgGCCgACCg -3'
miRNA:   3'- -GGACCa--GGCGCGGa--------------CGU--AgCGGgUGG- -5'
29459 3' -60.5 NC_006151.1 + 54606 0.66 0.734867
Target:  5'- gCgUGGUCCcgguGCGCCggGCG-CGCCC-Cg -3'
miRNA:   3'- -GgACCAGG----CGCGGa-CGUaGCGGGuGg -5'
29459 3' -60.5 NC_006151.1 + 85359 0.66 0.734867
Target:  5'- gCUGG--CGCGCCUGCgcGUgGUCC-CCg -3'
miRNA:   3'- gGACCagGCGCGGACG--UAgCGGGuGG- -5'
29459 3' -60.5 NC_006151.1 + 88905 0.66 0.734867
Target:  5'- --gGGUCgGCGUCgggcgaGCGgaagCGCCCGCg -3'
miRNA:   3'- ggaCCAGgCGCGGa-----CGUa---GCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 57120 0.66 0.734867
Target:  5'- gCCg---CCGCGCCcgGCgGUCGCCC-CUg -3'
miRNA:   3'- -GGaccaGGCGCGGa-CG-UAGCGGGuGG- -5'
29459 3' -60.5 NC_006151.1 + 40027 0.66 0.725371
Target:  5'- aCCaGcGUCCGCGCCgccgccggggGCGcCGuggagaCCCACCg -3'
miRNA:   3'- -GGaC-CAGGCGCGGa---------CGUaGC------GGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 97395 0.66 0.725371
Target:  5'- gCCUcGUCCGUGCCguggaucGCGUUGUCgACg -3'
miRNA:   3'- -GGAcCAGGCGCGGa------CGUAGCGGgUGg -5'
29459 3' -60.5 NC_006151.1 + 114104 0.66 0.725371
Target:  5'- aCCUGGgccUCgGCGgCUGCugccccacgUGCgCCGCCg -3'
miRNA:   3'- -GGACC---AGgCGCgGACGua-------GCG-GGUGG- -5'
29459 3' -60.5 NC_006151.1 + 134321 0.66 0.725371
Target:  5'- gCUGcGcCuCGCGCCggGCAUCGCCacggacguGCCc -3'
miRNA:   3'- gGAC-CaG-GCGCGGa-CGUAGCGGg-------UGG- -5'
29459 3' -60.5 NC_006151.1 + 65826 0.66 0.725371
Target:  5'- -aUGGgcggCCGCGCCaGCGcgGCCCGgCu -3'
miRNA:   3'- ggACCa---GGCGCGGaCGUagCGGGUgG- -5'
29459 3' -60.5 NC_006151.1 + 68218 0.66 0.725371
Target:  5'- --cGGcCCuGCGCCagGCGcagCGCCCGCg -3'
miRNA:   3'- ggaCCaGG-CGCGGa-CGUa--GCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 32036 0.66 0.725371
Target:  5'- cCCUccGcGUCCGCaGCCgccucUGCAgccgcCGCCCGCg -3'
miRNA:   3'- -GGA--C-CAGGCG-CGG-----ACGUa----GCGGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.