miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 5' -54.8 NC_006151.1 + 89377 0.66 0.940491
Target:  5'- ---gCGGUUUUaaaaacGCGCgAGCGUGGGCGu -3'
miRNA:   3'- gucgGCCAAGA------UGCGgUUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 62033 0.66 0.940491
Target:  5'- cCAGCCccccgCUGCGCCG-CGUGG-CGg -3'
miRNA:   3'- -GUCGGccaa-GAUGCGGUuGCACCuGU- -5'
29459 5' -54.8 NC_006151.1 + 18306 0.66 0.940491
Target:  5'- aAGCCGGagCgggGCGCCuccuCG-GGGCGc -3'
miRNA:   3'- gUCGGCCaaGa--UGCGGuu--GCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 63191 0.66 0.940491
Target:  5'- gGGCCGGg-CU-CGCCGACcaUGGGCu -3'
miRNA:   3'- gUCGGCCaaGAuGCGGUUGc-ACCUGu -5'
29459 5' -54.8 NC_006151.1 + 122403 0.66 0.935638
Target:  5'- -cGCUGGcggcgCU-CGCCGcCGUGGACGc -3'
miRNA:   3'- guCGGCCaa---GAuGCGGUuGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 103685 0.66 0.935638
Target:  5'- gCGGCgGGggugCUgcGCGCCGcCGUGGAgCAc -3'
miRNA:   3'- -GUCGgCCaa--GA--UGCGGUuGCACCU-GU- -5'
29459 5' -54.8 NC_006151.1 + 50493 0.66 0.935638
Target:  5'- gAGCCGGaccccgUCUACGCCAcCGUcGucCAg -3'
miRNA:   3'- gUCGGCCa-----AGAUGCGGUuGCA-CcuGU- -5'
29459 5' -54.8 NC_006151.1 + 59191 0.66 0.935139
Target:  5'- uCGGCCuugcgcaGGUUCUucACGC--GCGUGGGCc -3'
miRNA:   3'- -GUCGG-------CCAAGA--UGCGguUGCACCUGu -5'
29459 5' -54.8 NC_006151.1 + 123930 0.66 0.930541
Target:  5'- gGGCCGccUCggccuCGCCGACGcccgGGACGg -3'
miRNA:   3'- gUCGGCcaAGau---GCGGUUGCa---CCUGU- -5'
29459 5' -54.8 NC_006151.1 + 75415 0.66 0.930541
Target:  5'- gGGuCCGGgag-GC-CCGGCGUGGGCGc -3'
miRNA:   3'- gUC-GGCCaagaUGcGGUUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 87280 0.66 0.930541
Target:  5'- cCAGCCGGggCUgcacGCGCCGccccccucgccCGUGGcGCAc -3'
miRNA:   3'- -GUCGGCCaaGA----UGCGGUu----------GCACC-UGU- -5'
29459 5' -54.8 NC_006151.1 + 3910 0.66 0.925199
Target:  5'- aGGCCGGg-CUGCucggGCCAgaGCGgGGGCAg -3'
miRNA:   3'- gUCGGCCaaGAUG----CGGU--UGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 74356 0.66 0.921877
Target:  5'- gGGCCGGUUgUGCaccaggccgccGCCGACGUugcgaaaguucaccuGGGCc -3'
miRNA:   3'- gUCGGCCAAgAUG-----------CGGUUGCA---------------CCUGu -5'
29459 5' -54.8 NC_006151.1 + 88153 0.66 0.919612
Target:  5'- aGGCCGGggugCUccgcgcagGCGCCGAgGUGGuagACGg -3'
miRNA:   3'- gUCGGCCaa--GA--------UGCGGUUgCACC---UGU- -5'
29459 5' -54.8 NC_006151.1 + 19011 0.66 0.919612
Target:  5'- cCAGCCGcGcgC-GCGCCGGCGaGGugAa -3'
miRNA:   3'- -GUCGGC-CaaGaUGCGGUUGCaCCugU- -5'
29459 5' -54.8 NC_006151.1 + 20187 0.66 0.919612
Target:  5'- gCGGCCGGUagaugcgauUCcGCGCgCAGCGccGGGCc -3'
miRNA:   3'- -GUCGGCCA---------AGaUGCG-GUUGCa-CCUGu -5'
29459 5' -54.8 NC_006151.1 + 58764 0.66 0.919612
Target:  5'- gCGGCCGccgagcccgUCcacgGCGCCGccgucACGUGGACGa -3'
miRNA:   3'- -GUCGGCca-------AGa---UGCGGU-----UGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 55245 0.66 0.918466
Target:  5'- gCAGCCGGUgcaggACGCCuuccgcaccucCGUGGuCAa -3'
miRNA:   3'- -GUCGGCCAaga--UGCGGuu---------GCACCuGU- -5'
29459 5' -54.8 NC_006151.1 + 2206 0.66 0.913781
Target:  5'- gGGCCGGUgggUCUccacgGCGCCcccggcggcGGCGcGGACGc -3'
miRNA:   3'- gUCGGCCA---AGA-----UGCGG---------UUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 58840 0.67 0.907706
Target:  5'- aCAGCaGGU---GCGCCAgcGCGUGGAg- -3'
miRNA:   3'- -GUCGgCCAagaUGCGGU--UGCACCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.