miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 3' -54.6 NC_006151.1 + 35539 0.66 0.93096
Target:  5'- aUCC-CAUUGGCCggccgUCggGGAAGuccGCGGCg -3'
miRNA:   3'- aAGGuGUAGUCGG-----AGa-CCUUC---UGCCG- -5'
29460 3' -54.6 NC_006151.1 + 120055 0.66 0.93096
Target:  5'- cUCCACGggCAGCCcgUGGAGG--GGCg -3'
miRNA:   3'- aAGGUGUa-GUCGGagACCUUCugCCG- -5'
29460 3' -54.6 NC_006151.1 + 115006 0.66 0.93096
Target:  5'- --gCGCAUggcCAGCUUgUGGuAGACGGUg -3'
miRNA:   3'- aagGUGUA---GUCGGAgACCuUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 8719 0.66 0.93096
Target:  5'- cUCCGcCGUC-GCCUCgguccgaGGAGGGgGGUg -3'
miRNA:   3'- aAGGU-GUAGuCGGAGa------CCUUCUgCCG- -5'
29460 3' -54.6 NC_006151.1 + 99661 0.66 0.925566
Target:  5'- cUUCCGCGcgCagAGCCgCUGGGGccugcgcgccGACGGCg -3'
miRNA:   3'- -AAGGUGUa-G--UCGGaGACCUU----------CUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 91296 0.66 0.925566
Target:  5'- -gCCGCGUCAGCagccgCgccgGGAAGGCGcCg -3'
miRNA:   3'- aaGGUGUAGUCGga---Ga---CCUUCUGCcG- -5'
29460 3' -54.6 NC_006151.1 + 79349 0.66 0.920497
Target:  5'- -cCCGCGUCGGCCgaagaaaauauugaUGGAuuauCGGCa -3'
miRNA:   3'- aaGGUGUAGUCGGag------------ACCUucu-GCCG- -5'
29460 3' -54.6 NC_006151.1 + 141959 0.66 0.919922
Target:  5'- -cCCACGUCcGgCUCUGcGGgauccggucGGGCGGCc -3'
miRNA:   3'- aaGGUGUAGuCgGAGAC-CU---------UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 113989 0.66 0.914026
Target:  5'- -aCCACcgugcgCGGCCUCUcGAacccgcucaucaAGACGGCc -3'
miRNA:   3'- aaGGUGua----GUCGGAGAcCU------------UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 39494 0.66 0.911597
Target:  5'- cUCCGCG-CGGCCgugCUGGAcucuagcuccaucGugGGCc -3'
miRNA:   3'- aAGGUGUaGUCGGa--GACCUu------------CugCCG- -5'
29460 3' -54.6 NC_006151.1 + 77421 0.66 0.90788
Target:  5'- gUCCguGCAcCGGCgCUCgcGGGAGAuCGGCa -3'
miRNA:   3'- aAGG--UGUaGUCG-GAGa-CCUUCU-GCCG- -5'
29460 3' -54.6 NC_006151.1 + 137439 0.66 0.90788
Target:  5'- gUCCGCcuccgCGGCCUCcuccGAcGACGGCc -3'
miRNA:   3'- aAGGUGua---GUCGGAGac--CUuCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 35384 0.67 0.901486
Target:  5'- aUCC-CAUUGGCCgUCgauggGGcAAGAUGGCc -3'
miRNA:   3'- aAGGuGUAGUCGG-AGa----CC-UUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 117330 0.67 0.8735
Target:  5'- -gCgGCGUCGGCCUCggccuugcccaGGAAGAaguagUGGCg -3'
miRNA:   3'- aaGgUGUAGUCGGAGa----------CCUUCU-----GCCG- -5'
29460 3' -54.6 NC_006151.1 + 21418 0.67 0.8735
Target:  5'- -gCgGCGUCucgGGCCUC-GGggGucGCGGCg -3'
miRNA:   3'- aaGgUGUAG---UCGGAGaCCuuC--UGCCG- -5'
29460 3' -54.6 NC_006151.1 + 134523 0.67 0.872753
Target:  5'- cUCCgcgGCAUCGucgucuuccccacGCC-CUGGGAGAgCGGCc -3'
miRNA:   3'- aAGG---UGUAGU-------------CGGaGACCUUCU-GCCG- -5'
29460 3' -54.6 NC_006151.1 + 35301 0.68 0.858124
Target:  5'- aUCC-CAUUGGCCgUCgagGGGccaAGAUGGCg -3'
miRNA:   3'- aAGGuGUAGUCGG-AGa--CCU---UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 21472 0.68 0.841887
Target:  5'- -cCCGCGUC-GCCggCUcGGGcAGGCGGCc -3'
miRNA:   3'- aaGGUGUAGuCGGa-GA-CCU-UCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 89099 0.68 0.841887
Target:  5'- gUUCCGCGggGGCUUcCUGcgcgagaccGAGGGCGGCg -3'
miRNA:   3'- -AAGGUGUagUCGGA-GAC---------CUUCUGCCG- -5'
29460 3' -54.6 NC_006151.1 + 66766 0.68 0.841887
Target:  5'- -gCCGCGaCGGCCgccCUcGGGAcGGCGGCg -3'
miRNA:   3'- aaGGUGUaGUCGGa--GA-CCUU-CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.