miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 5' -59 NC_006151.1 + 137055 0.66 0.764441
Target:  5'- gGcGCCgGUGUacCGCGUggaGCUGGCGCa- -3'
miRNA:   3'- aC-CGG-CACAa-GUGCGa--CGACCGCGac -5'
29460 5' -59 NC_006151.1 + 118099 0.66 0.764441
Target:  5'- aGGCgcUGcgcCGCGacCUGCUGGCGCUGc -3'
miRNA:   3'- aCCGgcACaa-GUGC--GACGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 121143 0.66 0.764441
Target:  5'- cUGGCCGacggCGgGCcGCUGGUGCa- -3'
miRNA:   3'- -ACCGGCacaaGUgCGaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 131060 0.66 0.754951
Target:  5'- aGGCCGUcucCAUGCcGCggagGGCGCg- -3'
miRNA:   3'- aCCGGCAcaaGUGCGaCGa---CCGCGac -5'
29460 5' -59 NC_006151.1 + 87309 0.66 0.754951
Target:  5'- cGcCCGUGgcgCACGCcgUGCcGGCGCUc -3'
miRNA:   3'- aCcGGCACaa-GUGCG--ACGaCCGCGAc -5'
29460 5' -59 NC_006151.1 + 56654 0.66 0.753996
Target:  5'- aGGCCGUGUaC-CGCUGgUggacgacGGCGCc- -3'
miRNA:   3'- aCCGGCACAaGuGCGACgA-------CCGCGac -5'
29460 5' -59 NC_006151.1 + 106131 0.66 0.736631
Target:  5'- cGGCCGUGcuggccacgacgcucUCGCGCaccuucggGGCGCUGg -3'
miRNA:   3'- aCCGGCACa--------------AGUGCGacga----CCGCGAC- -5'
29460 5' -59 NC_006151.1 + 121875 0.66 0.735658
Target:  5'- -cGCCGcucacGUgCGCGCUGCgccUGGCGCUc -3'
miRNA:   3'- acCGGCa----CAaGUGCGACG---ACCGCGAc -5'
29460 5' -59 NC_006151.1 + 22337 0.66 0.735658
Target:  5'- aGcGCCGccaauaGCGCUGCgagcagcaUGGCGCUGg -3'
miRNA:   3'- aC-CGGCacaag-UGCGACG--------ACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 65440 0.66 0.735658
Target:  5'- aGGCCGgGaaCAUGa-GCUGGCGCa- -3'
miRNA:   3'- aCCGGCaCaaGUGCgaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 136992 0.66 0.725873
Target:  5'- gGGCgGcGggCGCGC-GCgcacGGCGCUGg -3'
miRNA:   3'- aCCGgCaCaaGUGCGaCGa---CCGCGAC- -5'
29460 5' -59 NC_006151.1 + 68767 0.66 0.725873
Target:  5'- cGGCgGUGgcgCGCGCgGCgaGGUGCg- -3'
miRNA:   3'- aCCGgCACaa-GUGCGaCGa-CCGCGac -5'
29460 5' -59 NC_006151.1 + 104279 0.66 0.716007
Target:  5'- cGGCgGgcccgC-CGCUGCaGGCGCUGc -3'
miRNA:   3'- aCCGgCacaa-GuGCGACGaCCGCGAC- -5'
29460 5' -59 NC_006151.1 + 83327 0.66 0.715016
Target:  5'- gGGCCGUGagcaggCGCGCguccacgUGCUccccGGCGCg- -3'
miRNA:   3'- aCCGGCACaa----GUGCG-------ACGA----CCGCGac -5'
29460 5' -59 NC_006151.1 + 39891 0.67 0.706071
Target:  5'- cGGCCGaGUUgCGCGCcuucUGCgccgcgGGCuGCUGg -3'
miRNA:   3'- aCCGGCaCAA-GUGCG----ACGa-----CCG-CGAC- -5'
29460 5' -59 NC_006151.1 + 5690 0.67 0.706071
Target:  5'- -cGCCGUGccggCGCugcggccaccGCUGCUGGCuguGCUGg -3'
miRNA:   3'- acCGGCACaa--GUG----------CGACGACCG---CGAC- -5'
29460 5' -59 NC_006151.1 + 118156 0.67 0.706071
Target:  5'- cGGCgGUG---GCGCcGCUGGUGCg- -3'
miRNA:   3'- aCCGgCACaagUGCGaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 121917 0.67 0.706071
Target:  5'- gGGCCGagggGgaccgCGUGCUGggGGCGCUGg -3'
miRNA:   3'- aCCGGCa---Caa---GUGCGACgaCCGCGAC- -5'
29460 5' -59 NC_006151.1 + 103465 0.67 0.706071
Target:  5'- cGuGCCGgg--CACGgUGCUcgcGGCGCUGu -3'
miRNA:   3'- aC-CGGCacaaGUGCgACGA---CCGCGAC- -5'
29460 5' -59 NC_006151.1 + 130284 0.67 0.686022
Target:  5'- aGGCCGcGggCGCGCgccgGCcgacGGCGCg- -3'
miRNA:   3'- aCCGGCaCaaGUGCGa---CGa---CCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.