Results 1 - 20 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29470 | 5' | -58.6 | NC_006151.1 | + | 121264 | 0.66 | 0.810759 |
Target: 5'- -uGGCGGCcGCGCUggcggagaUcaacgggcGCGUGGCCGACc -3' miRNA: 3'- acCCGCUGcUGCGG--------A--------UGCACCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 4541 | 0.66 | 0.810759 |
Target: 5'- cUGGGCGGCcauGGCGUCcccgAUGUGcGgCAGCg -3' miRNA: 3'- -ACCCGCUG---CUGCGGa---UGCAC-CgGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 86241 | 0.66 | 0.810759 |
Target: 5'- --uGCGAcauCGGCGCCgugcuggcCGUGGUCGACg -3' miRNA: 3'- accCGCU---GCUGCGGau------GCACCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 115573 | 0.66 | 0.810759 |
Target: 5'- cGGGCGcGCGGgcagguCGCgCUcgagcagcucgcGCGUGGcCCAGCg -3' miRNA: 3'- aCCCGC-UGCU------GCG-GA------------UGCACC-GGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 120835 | 0.66 | 0.810759 |
Target: 5'- cGcGCGACGACaCgUGgGUGGCCAcguACa -3' miRNA: 3'- aCcCGCUGCUGcGgAUgCACCGGU---UG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 27352 | 0.66 | 0.810759 |
Target: 5'- gGGGuCGugGGCcgggGCCcggGCG-GGUCGACg -3' miRNA: 3'- aCCC-GCugCUG----CGGa--UGCaCCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 40439 | 0.66 | 0.810759 |
Target: 5'- -cGGCGGCGcuugccuccccgGCGCCUGCcuccccggcccgGUGGCCc-- -3' miRNA: 3'- acCCGCUGC------------UGCGGAUG------------CACCGGuug -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 62552 | 0.66 | 0.810759 |
Target: 5'- gGGGCaACGACGaguaCCUGC-UGGCCc-- -3' miRNA: 3'- aCCCGcUGCUGC----GGAUGcACCGGuug -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 118154 | 0.66 | 0.810759 |
Target: 5'- cGcGGCGGUGGCGCCgcuggUGCGcGGCCuGACc -3' miRNA: 3'- aC-CCGCUGCUGCGG-----AUGCaCCGG-UUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 76075 | 0.66 | 0.803787 |
Target: 5'- aGGGCGccagcagcgacagggGCGGCGCCUucuccaucaggacGCGcagcaucUGGUCGGCc -3' miRNA: 3'- aCCCGC---------------UGCUGCGGA-------------UGC-------ACCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 59295 | 0.66 | 0.802029 |
Target: 5'- cGcGGCGugG-CGCCcGCGgcucagcgGGCCcGCg -3' miRNA: 3'- aC-CCGCugCuGCGGaUGCa-------CCGGuUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 5859 | 0.66 | 0.802029 |
Target: 5'- aGGGgGACGAgCGCC--CGgGGCCGc- -3' miRNA: 3'- aCCCgCUGCU-GCGGauGCaCCGGUug -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 101534 | 0.66 | 0.802029 |
Target: 5'- aGGccuucGUGGCG-CGCCUGCGcccGGCgGACg -3' miRNA: 3'- aCC-----CGCUGCuGCGGAUGCa--CCGgUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 67292 | 0.66 | 0.802029 |
Target: 5'- cUGGuGCcGCGACGCgcGCGUGGaCCAc- -3' miRNA: 3'- -ACC-CGcUGCUGCGgaUGCACC-GGUug -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 96068 | 0.66 | 0.802029 |
Target: 5'- -uGGCGAgCGA-GCCgcgcGCGcGGCCGGCg -3' miRNA: 3'- acCCGCU-GCUgCGGa---UGCaCCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 99589 | 0.66 | 0.802029 |
Target: 5'- gGuGGCGGCGgccgaGCGCC-GCGccgGGCUGGCg -3' miRNA: 3'- aC-CCGCUGC-----UGCGGaUGCa--CCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 118886 | 0.66 | 0.802029 |
Target: 5'- cGcGGCGGCGACGCg-GCc--GCCGGCg -3' miRNA: 3'- aC-CCGCUGCUGCGgaUGcacCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 121661 | 0.66 | 0.802029 |
Target: 5'- cGGGCgGGCGGagggggggaGCgaGCG-GGCCGACc -3' miRNA: 3'- aCCCG-CUGCUg--------CGgaUGCaCCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 38828 | 0.66 | 0.802029 |
Target: 5'- -cGGCGGCuucCGCC-GCGUcccGGCCGGCg -3' miRNA: 3'- acCCGCUGcu-GCGGaUGCA---CCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 61767 | 0.66 | 0.802029 |
Target: 5'- cGGGgGcCGugGUgCUGCGgcgcgaGGCCGGCc -3' miRNA: 3'- aCCCgCuGCugCG-GAUGCa-----CCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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