miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 121264 0.66 0.810759
Target:  5'- -uGGCGGCcGCGCUggcggagaUcaacgggcGCGUGGCCGACc -3'
miRNA:   3'- acCCGCUGcUGCGG--------A--------UGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 4541 0.66 0.810759
Target:  5'- cUGGGCGGCcauGGCGUCcccgAUGUGcGgCAGCg -3'
miRNA:   3'- -ACCCGCUG---CUGCGGa---UGCAC-CgGUUG- -5'
29470 5' -58.6 NC_006151.1 + 86241 0.66 0.810759
Target:  5'- --uGCGAcauCGGCGCCgugcuggcCGUGGUCGACg -3'
miRNA:   3'- accCGCU---GCUGCGGau------GCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 115573 0.66 0.810759
Target:  5'- cGGGCGcGCGGgcagguCGCgCUcgagcagcucgcGCGUGGcCCAGCg -3'
miRNA:   3'- aCCCGC-UGCU------GCG-GA------------UGCACC-GGUUG- -5'
29470 5' -58.6 NC_006151.1 + 120835 0.66 0.810759
Target:  5'- cGcGCGACGACaCgUGgGUGGCCAcguACa -3'
miRNA:   3'- aCcCGCUGCUGcGgAUgCACCGGU---UG- -5'
29470 5' -58.6 NC_006151.1 + 27352 0.66 0.810759
Target:  5'- gGGGuCGugGGCcgggGCCcggGCG-GGUCGACg -3'
miRNA:   3'- aCCC-GCugCUG----CGGa--UGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 40439 0.66 0.810759
Target:  5'- -cGGCGGCGcuugccuccccgGCGCCUGCcuccccggcccgGUGGCCc-- -3'
miRNA:   3'- acCCGCUGC------------UGCGGAUG------------CACCGGuug -5'
29470 5' -58.6 NC_006151.1 + 62552 0.66 0.810759
Target:  5'- gGGGCaACGACGaguaCCUGC-UGGCCc-- -3'
miRNA:   3'- aCCCGcUGCUGC----GGAUGcACCGGuug -5'
29470 5' -58.6 NC_006151.1 + 118154 0.66 0.810759
Target:  5'- cGcGGCGGUGGCGCCgcuggUGCGcGGCCuGACc -3'
miRNA:   3'- aC-CCGCUGCUGCGG-----AUGCaCCGG-UUG- -5'
29470 5' -58.6 NC_006151.1 + 76075 0.66 0.803787
Target:  5'- aGGGCGccagcagcgacagggGCGGCGCCUucuccaucaggacGCGcagcaucUGGUCGGCc -3'
miRNA:   3'- aCCCGC---------------UGCUGCGGA-------------UGC-------ACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 59295 0.66 0.802029
Target:  5'- cGcGGCGugG-CGCCcGCGgcucagcgGGCCcGCg -3'
miRNA:   3'- aC-CCGCugCuGCGGaUGCa-------CCGGuUG- -5'
29470 5' -58.6 NC_006151.1 + 5859 0.66 0.802029
Target:  5'- aGGGgGACGAgCGCC--CGgGGCCGc- -3'
miRNA:   3'- aCCCgCUGCU-GCGGauGCaCCGGUug -5'
29470 5' -58.6 NC_006151.1 + 101534 0.66 0.802029
Target:  5'- aGGccuucGUGGCG-CGCCUGCGcccGGCgGACg -3'
miRNA:   3'- aCC-----CGCUGCuGCGGAUGCa--CCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 67292 0.66 0.802029
Target:  5'- cUGGuGCcGCGACGCgcGCGUGGaCCAc- -3'
miRNA:   3'- -ACC-CGcUGCUGCGgaUGCACC-GGUug -5'
29470 5' -58.6 NC_006151.1 + 96068 0.66 0.802029
Target:  5'- -uGGCGAgCGA-GCCgcgcGCGcGGCCGGCg -3'
miRNA:   3'- acCCGCU-GCUgCGGa---UGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 99589 0.66 0.802029
Target:  5'- gGuGGCGGCGgccgaGCGCC-GCGccgGGCUGGCg -3'
miRNA:   3'- aC-CCGCUGC-----UGCGGaUGCa--CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 118886 0.66 0.802029
Target:  5'- cGcGGCGGCGACGCg-GCc--GCCGGCg -3'
miRNA:   3'- aC-CCGCUGCUGCGgaUGcacCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 121661 0.66 0.802029
Target:  5'- cGGGCgGGCGGagggggggaGCgaGCG-GGCCGACc -3'
miRNA:   3'- aCCCG-CUGCUg--------CGgaUGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 38828 0.66 0.802029
Target:  5'- -cGGCGGCuucCGCC-GCGUcccGGCCGGCg -3'
miRNA:   3'- acCCGCUGcu-GCGGaUGCA---CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 61767 0.66 0.802029
Target:  5'- cGGGgGcCGugGUgCUGCGgcgcgaGGCCGGCc -3'
miRNA:   3'- aCCCgCuGCugCG-GAUGCa-----CCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.