miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29471 5' -58.2 NC_006151.1 + 52395 0.65 0.8007
Target:  5'- gGCGGCGGGcgCCg--CCGCGCccgagaagucaaagUGCUCc -3'
miRNA:   3'- aCGCCGUCUa-GGucaGGUGCG--------------ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 21335 0.66 0.785241
Target:  5'- cGCGGCGGG---GGUCCGCgGCUggaacgGCUCc -3'
miRNA:   3'- aCGCCGUCUaggUCAGGUG-CGA------CGAG- -5'
29471 5' -58.2 NC_006151.1 + 4632 0.66 0.785241
Target:  5'- cGCuGGCAGAaCUGGUUgaaGCGCUGgUCg -3'
miRNA:   3'- aCG-CCGUCUaGGUCAGg--UGCGACgAG- -5'
29471 5' -58.2 NC_006151.1 + 131914 0.66 0.785241
Target:  5'- gGCGGCAGcagggCC--UCCGCGgUGCUg -3'
miRNA:   3'- aCGCCGUCua---GGucAGGUGCgACGAg -5'
29471 5' -58.2 NC_006151.1 + 57447 0.66 0.781544
Target:  5'- cGCGGCGGcccccgcgucggCCAGgugCCGCGCcGCg- -3'
miRNA:   3'- aCGCCGUCua----------GGUCa--GGUGCGaCGag -5'
29471 5' -58.2 NC_006151.1 + 3437 0.66 0.775958
Target:  5'- cGCGGCGGAagCCGccGUCgGgCGCggggUGCUCg -3'
miRNA:   3'- aCGCCGUCUa-GGU--CAGgU-GCG----ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 39041 0.66 0.775958
Target:  5'- aUGCGGCAGAUagCCGaccccgaggacGUgCGCGUgguggUGCUCu -3'
miRNA:   3'- -ACGCCGUCUA--GGU-----------CAgGUGCG-----ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 60638 0.66 0.775958
Target:  5'- cGgGGCGGGgcucCCGGcCCGCGCcGCg- -3'
miRNA:   3'- aCgCCGUCUa---GGUCaGGUGCGaCGag -5'
29471 5' -58.2 NC_006151.1 + 68019 0.66 0.775958
Target:  5'- gGCGGCguccAGGUCCAGgcggCCcgccgGCGCggcgggcacggGCUCg -3'
miRNA:   3'- aCGCCG----UCUAGGUCa---GG-----UGCGa----------CGAG- -5'
29471 5' -58.2 NC_006151.1 + 24738 0.66 0.766546
Target:  5'- gUGCGGCAGGaCCAGg-CACGUcGC-Cg -3'
miRNA:   3'- -ACGCCGUCUaGGUCagGUGCGaCGaG- -5'
29471 5' -58.2 NC_006151.1 + 64246 0.66 0.766546
Target:  5'- cGaCGGCGGcgCgGG-CCACGCU-CUCg -3'
miRNA:   3'- aC-GCCGUCuaGgUCaGGUGCGAcGAG- -5'
29471 5' -58.2 NC_006151.1 + 64941 0.66 0.766546
Target:  5'- cGCGuCAGcgCCuGgCCGCGCUGCg- -3'
miRNA:   3'- aCGCcGUCuaGGuCaGGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 77438 0.66 0.766546
Target:  5'- cGCGGgAGAUCggcaAGUucgggcUCACGCUGCg- -3'
miRNA:   3'- aCGCCgUCUAGg---UCA------GGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 64727 0.66 0.766546
Target:  5'- cGCcGCAGAaCCGGgCCACGa-GCUCg -3'
miRNA:   3'- aCGcCGUCUaGGUCaGGUGCgaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 58607 0.66 0.757014
Target:  5'- cGUGGcCGGGUCC-GUCUcgaaGCGCagcgGCUCg -3'
miRNA:   3'- aCGCC-GUCUAGGuCAGG----UGCGa---CGAG- -5'
29471 5' -58.2 NC_006151.1 + 131660 0.66 0.757014
Target:  5'- cGCcGCAGAUCCGa-CCGCGCgcgGCgUCa -3'
miRNA:   3'- aCGcCGUCUAGGUcaGGUGCGa--CG-AG- -5'
29471 5' -58.2 NC_006151.1 + 93654 0.66 0.757014
Target:  5'- gGcCGGCAGGUCCAGcaggaggcugUCGCGCgggGCg- -3'
miRNA:   3'- aC-GCCGUCUAGGUCa---------GGUGCGa--CGag -5'
29471 5' -58.2 NC_006151.1 + 40141 0.66 0.757014
Target:  5'- cGCGGCGGcgacggCCGGcCC-CGCggcccGCUCg -3'
miRNA:   3'- aCGCCGUCua----GGUCaGGuGCGa----CGAG- -5'
29471 5' -58.2 NC_006151.1 + 93999 0.66 0.757014
Target:  5'- uUGCGGCGGAUggCCucGUCC-CGCaGCg- -3'
miRNA:   3'- -ACGCCGUCUA--GGu-CAGGuGCGaCGag -5'
29471 5' -58.2 NC_006151.1 + 88088 0.66 0.757014
Target:  5'- gGCGGCAGGUgUAGUCgACGg-GCcCg -3'
miRNA:   3'- aCGCCGUCUAgGUCAGgUGCgaCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.