miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 3' -55.3 NC_006151.1 + 131513 0.66 0.927836
Target:  5'- cCG-CGCGGGGGAacGGCUGGaAGCgCUGc -3'
miRNA:   3'- cGCgGCGCCUCCU--CCGAUUaUUG-GAC- -5'
29472 3' -55.3 NC_006151.1 + 89731 0.66 0.927836
Target:  5'- cGCgGCCGCGGuGGuGGGCgagacGAgCUGg -3'
miRNA:   3'- -CG-CGGCGCCuCC-UCCGauua-UUgGAC- -5'
29472 3' -55.3 NC_006151.1 + 133502 0.66 0.927302
Target:  5'- gGCGgCGCGGggggcgcGGGAGGagccGUAGCCa- -3'
miRNA:   3'- -CGCgGCGCC-------UCCUCCgau-UAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 29433 0.66 0.922381
Target:  5'- -gGCCGCGGGGGGcGGCgggGAgagggGACg-- -3'
miRNA:   3'- cgCGGCGCCUCCU-CCGa--UUa----UUGgac -5'
29472 3' -55.3 NC_006151.1 + 98266 0.66 0.922381
Target:  5'- uGCGCgCGCucGAGGAGGCc---GACCa- -3'
miRNA:   3'- -CGCG-GCGc-CUCCUCCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 109997 0.66 0.922381
Target:  5'- aGC-CCGCcGAGGAGGCgcccGAgCUGg -3'
miRNA:   3'- -CGcGGCGcCUCCUCCGauuaUUgGAC- -5'
29472 3' -55.3 NC_006151.1 + 64957 0.66 0.922381
Target:  5'- cGCGCUGCGGGcGcAGGCcGAgcGCCa- -3'
miRNA:   3'- -CGCGGCGCCUcC-UCCGaUUauUGGac -5'
29472 3' -55.3 NC_006151.1 + 66532 0.66 0.922381
Target:  5'- cGCGCCGCGcucuucGGGGGCgcgcgcGGCCg- -3'
miRNA:   3'- -CGCGGCGCcu----CCUCCGauua--UUGGac -5'
29472 3' -55.3 NC_006151.1 + 102882 0.66 0.922381
Target:  5'- aCGCCGCGGu---GGCg---GGCCUGc -3'
miRNA:   3'- cGCGGCGCCuccuCCGauuaUUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 30749 0.66 0.916682
Target:  5'- aGUGCCGCGGGcGGGGCggg-GGCa-- -3'
miRNA:   3'- -CGCGGCGCCUcCUCCGauuaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 64531 0.66 0.916682
Target:  5'- cCGCCGCGGccgcgucGGGGGCggcgaGGCCg- -3'
miRNA:   3'- cGCGGCGCCu------CCUCCGauua-UUGGac -5'
29472 3' -55.3 NC_006151.1 + 100228 0.66 0.916682
Target:  5'- gGCGCCGUGGccGAGcGCgUGGUGGCgCUc -3'
miRNA:   3'- -CGCGGCGCCucCUC-CG-AUUAUUG-GAc -5'
29472 3' -55.3 NC_006151.1 + 85171 0.66 0.916098
Target:  5'- gGCGCCGCGGGcGccgccgccccgcuGGGCaucgcgGACCUGc -3'
miRNA:   3'- -CGCGGCGCCUcC-------------UCCGauua--UUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 127323 0.66 0.910739
Target:  5'- cGCGgguCCGCGGgcGGGGGuGCUGGUAcACgUGg -3'
miRNA:   3'- -CGC---GGCGCC--UCCUC-CGAUUAU-UGgAC- -5'
29472 3' -55.3 NC_006151.1 + 40070 0.66 0.910739
Target:  5'- gGC-CCGCGGGGGccucGGGCgccggGGCCg- -3'
miRNA:   3'- -CGcGGCGCCUCC----UCCGauua-UUGGac -5'
29472 3' -55.3 NC_006151.1 + 32779 0.66 0.910739
Target:  5'- aCGCCGCGGccgcGGGGGGCcgAAgcgGACg-- -3'
miRNA:   3'- cGCGGCGCC----UCCUCCGa-UUa--UUGgac -5'
29472 3' -55.3 NC_006151.1 + 12417 0.66 0.904555
Target:  5'- gGgGCUggGUGGGGuGAGGCgAGUGACCg- -3'
miRNA:   3'- -CgCGG--CGCCUC-CUCCGaUUAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 91847 0.66 0.904555
Target:  5'- gGCGCCucggugugcgaGCGGAGacauGGGGCUcuuUGGCCUu -3'
miRNA:   3'- -CGCGG-----------CGCCUC----CUCCGAuu-AUUGGAc -5'
29472 3' -55.3 NC_006151.1 + 104015 0.66 0.904555
Target:  5'- cGCGCCGCGcGGcGGAGGUgg--AGCg-- -3'
miRNA:   3'- -CGCGGCGC-CU-CCUCCGauuaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 129528 0.66 0.904555
Target:  5'- cCGCCGaCGG-GGGGGCccggGGCCg- -3'
miRNA:   3'- cGCGGC-GCCuCCUCCGauuaUUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.