miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 5' -59.9 NC_006151.1 + 104336 0.66 0.772972
Target:  5'- uCGCGGcgCCcgUCAUCggguCGCUCUucgGCGCCGa -3'
miRNA:   3'- -GCGCCuaGG--AGUAG----GUGGGG---UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 71072 0.66 0.772972
Target:  5'- cCGUGG-UCUUCuaCCACCaCgGCGCCGc -3'
miRNA:   3'- -GCGCCuAGGAGuaGGUGG-GgUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 93071 0.66 0.772972
Target:  5'- cCGCGGGcuccgUCUCAccucugCCGuCCCCcCGCCGu -3'
miRNA:   3'- -GCGCCUa----GGAGUa-----GGU-GGGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 66870 0.66 0.772972
Target:  5'- gGCGGcgCgaagggCGcgCCcgGCCCCGCGCCGg -3'
miRNA:   3'- gCGCCuaGga----GUa-GG--UGGGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 32612 0.66 0.772972
Target:  5'- gCGCGGGgcgccgcgCCUCucccucccgcuUCC-CCCCuCGCCGc -3'
miRNA:   3'- -GCGCCUa-------GGAGu----------AGGuGGGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 98654 0.66 0.771155
Target:  5'- gGCGGGcgcgcgcUCCgccgacgaCGUCCuggccgcGCCCCGCGUCGu -3'
miRNA:   3'- gCGCCU-------AGGa-------GUAGG-------UGGGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 67667 0.66 0.764758
Target:  5'- aCGCGGAagaggcccgagucgcUCgcgcgcagcucccgCUUGUCCGCCUgGCGCCa -3'
miRNA:   3'- -GCGCCU---------------AG--------------GAGUAGGUGGGgUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 35199 0.66 0.76384
Target:  5'- gCGCGGGagacgCCUCcgCgCGCCCaUugGCCc -3'
miRNA:   3'- -GCGCCUa----GGAGuaG-GUGGG-GugCGGc -5'
29472 5' -59.9 NC_006151.1 + 59425 0.66 0.76384
Target:  5'- aGCGGcgCCagcucggCGUCgGCCgCCGcCGCCGc -3'
miRNA:   3'- gCGCCuaGGa------GUAGgUGG-GGU-GCGGC- -5'
29472 5' -59.9 NC_006151.1 + 69351 0.66 0.76384
Target:  5'- gCGCGGcguagCCcgCGUCCAgCCagucgaGCGCCGu -3'
miRNA:   3'- -GCGCCua---GGa-GUAGGUgGGg-----UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 57353 0.66 0.76384
Target:  5'- cCGCGGGgcCCUCGcgCCGCCgCA-GCCa -3'
miRNA:   3'- -GCGCCUa-GGAGUa-GGUGGgGUgCGGc -5'
29472 5' -59.9 NC_006151.1 + 49445 0.66 0.76384
Target:  5'- aCGCGua-CCUCGUCCagacgggccggGCCCC-CGUCGa -3'
miRNA:   3'- -GCGCcuaGGAGUAGG-----------UGGGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 138500 0.66 0.76292
Target:  5'- gGCGGGcgcccgcugcaccUCCUCGUCCucggggugauggGCgCgUACGCCGg -3'
miRNA:   3'- gCGCCU-------------AGGAGUAGG------------UG-GgGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 77720 0.66 0.754597
Target:  5'- aGCaGGA-CCgCGUCCuggaGCUCCugGCCGa -3'
miRNA:   3'- gCG-CCUaGGaGUAGG----UGGGGugCGGC- -5'
29472 5' -59.9 NC_006151.1 + 43947 0.66 0.754597
Target:  5'- cCGgGGGcCCUCcccggCCGCCCCGaccCGCCc -3'
miRNA:   3'- -GCgCCUaGGAGua---GGUGGGGU---GCGGc -5'
29472 5' -59.9 NC_006151.1 + 51075 0.66 0.754597
Target:  5'- gGCGGccUCCUCcgcucgcCCGCCCCucucCGCCu -3'
miRNA:   3'- gCGCCu-AGGAGua-----GGUGGGGu---GCGGc -5'
29472 5' -59.9 NC_006151.1 + 85217 0.66 0.754597
Target:  5'- aGCGGGUCCcCGagUACCUggaCGCGCUGa -3'
miRNA:   3'- gCGCCUAGGaGUagGUGGG---GUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 100956 0.66 0.754597
Target:  5'- aCGUGGGUgcCCguggAUCgGCUCCugGCCGa -3'
miRNA:   3'- -GCGCCUA--GGag--UAGgUGGGGugCGGC- -5'
29472 5' -59.9 NC_006151.1 + 71591 0.66 0.753667
Target:  5'- cCGCGGGcgccgcgUCgUCAcaccUCCACCaCCGCgGCCu -3'
miRNA:   3'- -GCGCCU-------AGgAGU----AGGUGG-GGUG-CGGc -5'
29472 5' -59.9 NC_006151.1 + 107026 0.66 0.745254
Target:  5'- gCGCuGAUCg-CGgcgCgGCCCCugGCCGg -3'
miRNA:   3'- -GCGcCUAGgaGUa--GgUGGGGugCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.