Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29474 | 3' | -63.3 | NC_006151.1 | + | 72632 | 0.67 | 0.470457 |
Target: 5'- gGCgGuCCCGCggucCCGcGGCUCAGGCgCUc -3' miRNA: 3'- -CGgU-GGGCGa---GGU-CCGAGUCCGgGAc -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 4124 | 0.67 | 0.470457 |
Target: 5'- gGCCugCCGCcgcucggCCGGGC-C-GGCCCc- -3' miRNA: 3'- -CGGugGGCGa------GGUCCGaGuCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 40295 | 0.67 | 0.470457 |
Target: 5'- cCgGCCC-CUCCAccGGCUCcucgAGGCCCUu -3' miRNA: 3'- cGgUGGGcGAGGU--CCGAG----UCCGGGAc -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 58573 | 0.67 | 0.467753 |
Target: 5'- cGCCGCCCGCcggcgucgcggccgUgaCCAGGUUCGuGGCCg-- -3' miRNA: 3'- -CGGUGGGCG--------------A--GGUCCGAGU-CCGGgac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 38402 | 0.67 | 0.461475 |
Target: 5'- gGgCGCCCcCUCCGgccuccccGGCUcCGGGCCCUc -3' miRNA: 3'- -CgGUGGGcGAGGU--------CCGA-GUCCGGGAc -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 117009 | 0.68 | 0.452585 |
Target: 5'- aCCACgCGCUCCcccgcGGGCcCGGGCCg-- -3' miRNA: 3'- cGGUGgGCGAGG-----UCCGaGUCCGGgac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 13464 | 0.68 | 0.443788 |
Target: 5'- cGCCcguCCCGCgggCCGGaccgccccgccGaCUCGGGUCCUGg -3' miRNA: 3'- -CGGu--GGGCGa--GGUC-----------C-GAGUCCGGGAC- -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 88857 | 0.68 | 0.443788 |
Target: 5'- aGCCGCUCccgcgggaGCUCCGGGCgcggGGGCUCg- -3' miRNA: 3'- -CGGUGGG--------CGAGGUCCGag--UCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 67506 | 0.68 | 0.443788 |
Target: 5'- cGCgGCUCGCgUCCGGGUcCAGGgCCa- -3' miRNA: 3'- -CGgUGGGCG-AGGUCCGaGUCCgGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 83110 | 0.68 | 0.442914 |
Target: 5'- gGgCGCCCGCgCCGGucgcagaGCUCGGGCgCCUu -3' miRNA: 3'- -CgGUGGGCGaGGUC-------CGAGUCCG-GGAc -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 47110 | 0.68 | 0.435089 |
Target: 5'- cGCU-CCUGCUgCGGGuCUcCAGGCCCa- -3' miRNA: 3'- -CGGuGGGCGAgGUCC-GA-GUCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 135991 | 0.68 | 0.435089 |
Target: 5'- gGCCACCUucgccCUCCAcgacGGcCUCAucgcGGCCCUGa -3' miRNA: 3'- -CGGUGGGc----GAGGU----CC-GAGU----CCGGGAC- -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 76833 | 0.68 | 0.433361 |
Target: 5'- gGCgGCCCGCgUCCGGGCgacguacaggaAGGCCa-- -3' miRNA: 3'- -CGgUGGGCG-AGGUCCGag---------UCCGGgac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 11018 | 0.68 | 0.426489 |
Target: 5'- cCCGCCCGCUcgcucgCCGGGC-CggccggccggGGGCCCg- -3' miRNA: 3'- cGGUGGGCGA------GGUCCGaG----------UCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 72076 | 0.68 | 0.409596 |
Target: 5'- aCCACCCGCgCCGucaGCUCGcGGgCCUGg -3' miRNA: 3'- cGGUGGGCGaGGUc--CGAGU-CCgGGAC- -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 131604 | 0.69 | 0.401308 |
Target: 5'- uGCCcCCC-CUCCGGGC-C-GGCCCg- -3' miRNA: 3'- -CGGuGGGcGAGGUCCGaGuCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 132830 | 0.69 | 0.396386 |
Target: 5'- gGCCGCCCGCgggacggccaccaCGGGCggCcGGCCCg- -3' miRNA: 3'- -CGGUGGGCGag-----------GUCCGa-GuCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 136269 | 0.69 | 0.393127 |
Target: 5'- uCCACCCGCggCC-GGCcuacgaccugCGGGCCCUc -3' miRNA: 3'- cGGUGGGCGa-GGuCCGa---------GUCCGGGAc -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 101589 | 0.69 | 0.393127 |
Target: 5'- cGCCGCCagcgaGCUCCgguGGGC-CGGGgCCUu -3' miRNA: 3'- -CGGUGGg----CGAGG---UCCGaGUCCgGGAc -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 114076 | 0.69 | 0.385055 |
Target: 5'- uGCCugUCGCUCuCGGGCaUGGGCuacuaCCUGg -3' miRNA: 3'- -CGGugGGCGAG-GUCCGaGUCCG-----GGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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