miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 72632 0.67 0.470457
Target:  5'- gGCgGuCCCGCggucCCGcGGCUCAGGCgCUc -3'
miRNA:   3'- -CGgU-GGGCGa---GGU-CCGAGUCCGgGAc -5'
29474 3' -63.3 NC_006151.1 + 4124 0.67 0.470457
Target:  5'- gGCCugCCGCcgcucggCCGGGC-C-GGCCCc- -3'
miRNA:   3'- -CGGugGGCGa------GGUCCGaGuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 40295 0.67 0.470457
Target:  5'- cCgGCCC-CUCCAccGGCUCcucgAGGCCCUu -3'
miRNA:   3'- cGgUGGGcGAGGU--CCGAG----UCCGGGAc -5'
29474 3' -63.3 NC_006151.1 + 58573 0.67 0.467753
Target:  5'- cGCCGCCCGCcggcgucgcggccgUgaCCAGGUUCGuGGCCg-- -3'
miRNA:   3'- -CGGUGGGCG--------------A--GGUCCGAGU-CCGGgac -5'
29474 3' -63.3 NC_006151.1 + 38402 0.67 0.461475
Target:  5'- gGgCGCCCcCUCCGgccuccccGGCUcCGGGCCCUc -3'
miRNA:   3'- -CgGUGGGcGAGGU--------CCGA-GUCCGGGAc -5'
29474 3' -63.3 NC_006151.1 + 117009 0.68 0.452585
Target:  5'- aCCACgCGCUCCcccgcGGGCcCGGGCCg-- -3'
miRNA:   3'- cGGUGgGCGAGG-----UCCGaGUCCGGgac -5'
29474 3' -63.3 NC_006151.1 + 13464 0.68 0.443788
Target:  5'- cGCCcguCCCGCgggCCGGaccgccccgccGaCUCGGGUCCUGg -3'
miRNA:   3'- -CGGu--GGGCGa--GGUC-----------C-GAGUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 88857 0.68 0.443788
Target:  5'- aGCCGCUCccgcgggaGCUCCGGGCgcggGGGCUCg- -3'
miRNA:   3'- -CGGUGGG--------CGAGGUCCGag--UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 67506 0.68 0.443788
Target:  5'- cGCgGCUCGCgUCCGGGUcCAGGgCCa- -3'
miRNA:   3'- -CGgUGGGCG-AGGUCCGaGUCCgGGac -5'
29474 3' -63.3 NC_006151.1 + 83110 0.68 0.442914
Target:  5'- gGgCGCCCGCgCCGGucgcagaGCUCGGGCgCCUu -3'
miRNA:   3'- -CgGUGGGCGaGGUC-------CGAGUCCG-GGAc -5'
29474 3' -63.3 NC_006151.1 + 47110 0.68 0.435089
Target:  5'- cGCU-CCUGCUgCGGGuCUcCAGGCCCa- -3'
miRNA:   3'- -CGGuGGGCGAgGUCC-GA-GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 135991 0.68 0.435089
Target:  5'- gGCCACCUucgccCUCCAcgacGGcCUCAucgcGGCCCUGa -3'
miRNA:   3'- -CGGUGGGc----GAGGU----CC-GAGU----CCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 76833 0.68 0.433361
Target:  5'- gGCgGCCCGCgUCCGGGCgacguacaggaAGGCCa-- -3'
miRNA:   3'- -CGgUGGGCG-AGGUCCGag---------UCCGGgac -5'
29474 3' -63.3 NC_006151.1 + 11018 0.68 0.426489
Target:  5'- cCCGCCCGCUcgcucgCCGGGC-CggccggccggGGGCCCg- -3'
miRNA:   3'- cGGUGGGCGA------GGUCCGaG----------UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 72076 0.68 0.409596
Target:  5'- aCCACCCGCgCCGucaGCUCGcGGgCCUGg -3'
miRNA:   3'- cGGUGGGCGaGGUc--CGAGU-CCgGGAC- -5'
29474 3' -63.3 NC_006151.1 + 131604 0.69 0.401308
Target:  5'- uGCCcCCC-CUCCGGGC-C-GGCCCg- -3'
miRNA:   3'- -CGGuGGGcGAGGUCCGaGuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 132830 0.69 0.396386
Target:  5'- gGCCGCCCGCgggacggccaccaCGGGCggCcGGCCCg- -3'
miRNA:   3'- -CGGUGGGCGag-----------GUCCGa-GuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 136269 0.69 0.393127
Target:  5'- uCCACCCGCggCC-GGCcuacgaccugCGGGCCCUc -3'
miRNA:   3'- cGGUGGGCGa-GGuCCGa---------GUCCGGGAc -5'
29474 3' -63.3 NC_006151.1 + 101589 0.69 0.393127
Target:  5'- cGCCGCCagcgaGCUCCgguGGGC-CGGGgCCUu -3'
miRNA:   3'- -CGGUGGg----CGAGG---UCCGaGUCCgGGAc -5'
29474 3' -63.3 NC_006151.1 + 114076 0.69 0.385055
Target:  5'- uGCCugUCGCUCuCGGGCaUGGGCuacuaCCUGg -3'
miRNA:   3'- -CGGugGGCGAG-GUCCGaGUCCG-----GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.