Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29474 | 5' | -55 | NC_006151.1 | + | 74888 | 0.65 | 0.918973 |
Target: 5'- -cCGUGGCCGG---GGccAGCcGAUGCCg -3' miRNA: 3'- caGUACCGGUCgaaCC--UCGaCUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 54836 | 0.65 | 0.918973 |
Target: 5'- cUCAcgGGCgAGCgcggGGAGUgccUGGUGCUc -3' miRNA: 3'- cAGUa-CCGgUCGaa--CCUCG---ACUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 5016 | 0.65 | 0.918973 |
Target: 5'- -gCcgGGCgGGCUccGGGGCcGggGCCg -3' miRNA: 3'- caGuaCCGgUCGAa-CCUCGaCuaCGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 74316 | 0.66 | 0.915438 |
Target: 5'- cGUCGUGGUgCGGgUgcaGGGGCUGGUucucguuccgcacggGCCg -3' miRNA: 3'- -CAGUACCG-GUCgAa--CCUCGACUA---------------CGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 92214 | 0.66 | 0.913032 |
Target: 5'- ----cGGCCGcGC-UGGAGCacGAUGCUg -3' miRNA: 3'- caguaCCGGU-CGaACCUCGa-CUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 106308 | 0.66 | 0.913032 |
Target: 5'- -aCAUGGCCAagacGC-UGGAcGC-GGUGCUg -3' miRNA: 3'- caGUACCGGU----CGaACCU-CGaCUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 85909 | 0.66 | 0.906841 |
Target: 5'- -cCGUGGCCGuGCaguacgaggaGGGGCUGG-GCCu -3' miRNA: 3'- caGUACCGGU-CGaa--------CCUCGACUaCGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 84243 | 0.66 | 0.906841 |
Target: 5'- uUCGUGGcCCAGC--GGAGCaUGcgcGUGCUc -3' miRNA: 3'- cAGUACC-GGUCGaaCCUCG-AC---UACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 640 | 0.66 | 0.893718 |
Target: 5'- -aCGUGacGCCGGCUUccGGGGC-GcgGCCg -3' miRNA: 3'- caGUAC--CGGUCGAA--CCUCGaCuaCGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 28535 | 0.66 | 0.893718 |
Target: 5'- cGUCcgGGaCCGGCcaaUGGGGgaGccGUGCCc -3' miRNA: 3'- -CAGuaCC-GGUCGa--ACCUCgaC--UACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 90038 | 0.66 | 0.893718 |
Target: 5'- ----cGGCCAGCcccaGGGC-GAUGCCg -3' miRNA: 3'- caguaCCGGUCGaac-CUCGaCUACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 91176 | 0.66 | 0.886793 |
Target: 5'- cGUCggGcGCCcGCgaggGGAGCaUGAUGCa -3' miRNA: 3'- -CAGuaC-CGGuCGaa--CCUCG-ACUACGg -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 136956 | 0.67 | 0.879631 |
Target: 5'- cGUCcUGcGCCGccuGC-UGGAGCUGGccGCCg -3' miRNA: 3'- -CAGuAC-CGGU---CGaACCUCGACUa-CGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 70807 | 0.67 | 0.879631 |
Target: 5'- cGUCGUGGgCAGCUaccGGcgcAGCUGGaucgUGCUc -3' miRNA: 3'- -CAGUACCgGUCGAa--CC---UCGACU----ACGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 113518 | 0.67 | 0.879631 |
Target: 5'- uUCGUGGCgGacgcgcGCUuccUGGcGCUGAUGCg -3' miRNA: 3'- cAGUACCGgU------CGA---ACCuCGACUACGg -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 121294 | 0.67 | 0.856774 |
Target: 5'- -gCGUGGCCgaccgcgacgGGCgcUGGAGCgugGAggcgGCCg -3' miRNA: 3'- caGUACCGG----------UCGa-ACCUCGa--CUa---CGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 98454 | 0.67 | 0.856774 |
Target: 5'- ---cUGGCCGGCcUGGcGCUGuggcGCCu -3' miRNA: 3'- caguACCGGUCGaACCuCGACua--CGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 108720 | 0.67 | 0.856774 |
Target: 5'- aGUgGUGGCCAGCgccGAGgaGAcggugGCCc -3' miRNA: 3'- -CAgUACCGGUCGaacCUCgaCUa----CGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 139615 | 0.67 | 0.856774 |
Target: 5'- cGUCcgGGCgCGGCUgGGGGCcauccGgcGCCg -3' miRNA: 3'- -CAGuaCCG-GUCGAaCCUCGa----CuaCGG- -5' |
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29474 | 5' | -55 | NC_006151.1 | + | 48850 | 0.67 | 0.848718 |
Target: 5'- cUCGUGGCgCGcGCUgcUGGAGCccgaGAUcGCCa -3' miRNA: 3'- cAGUACCG-GU-CGA--ACCUCGa---CUA-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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