miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 138110 0.66 0.754607
Target:  5'- gCCGCUGGCGGaCAugcuGCGCgGCCugGCCGUg -3'
miRNA:   3'- -GGUGGUCGUC-GU----CGUGgUGG--UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 67038 0.66 0.754607
Target:  5'- -gACCAcGCcgAGC-GCGCCACCGCCuaccuGCUg -3'
miRNA:   3'- ggUGGU-CG--UCGuCGUGGUGGUGG-----CGA- -5'
29476 3' -59.5 NC_006151.1 + 55235 0.66 0.754607
Target:  5'- gCGCCGGCGcGCAGCcggugcaggaCGCCuuCCGCa -3'
miRNA:   3'- gGUGGUCGU-CGUCGug--------GUGGu-GGCGa -5'
29476 3' -59.5 NC_006151.1 + 38641 0.66 0.754607
Target:  5'- uCCGCgGGgA-CGGcCACgGCCACCGCg -3'
miRNA:   3'- -GGUGgUCgUcGUC-GUGgUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 17907 0.66 0.754607
Target:  5'- -gACCAGC-GCGGCGgCGCUgAUCGCg -3'
miRNA:   3'- ggUGGUCGuCGUCGUgGUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 135315 0.66 0.754607
Target:  5'- aCCGagagguaCAGguGCaugAGCGCCGCCAggcacguguCCGCg -3'
miRNA:   3'- -GGUg------GUCguCG---UCGUGGUGGU---------GGCGa -5'
29476 3' -59.5 NC_006151.1 + 129619 0.66 0.754607
Target:  5'- gCACCAGCGGgucgAGCGCguCCAugagcuCCGCg -3'
miRNA:   3'- gGUGGUCGUCg---UCGUGguGGU------GGCGa -5'
29476 3' -59.5 NC_006151.1 + 114188 0.66 0.754607
Target:  5'- cCUACguGCAGCAGCucaacagcaucuACgAgUACCGCg -3'
miRNA:   3'- -GGUGguCGUCGUCG------------UGgUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 36352 0.66 0.754607
Target:  5'- gCCGCCGacccCGGCAGCACuCGCaGCgGCa -3'
miRNA:   3'- -GGUGGUc---GUCGUCGUG-GUGgUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 68106 0.66 0.754607
Target:  5'- gUCGcCCAGCgucaGGC-GCACgagcuCGCCGCCGCUc -3'
miRNA:   3'- -GGU-GGUCG----UCGuCGUG-----GUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 82220 0.66 0.754607
Target:  5'- aCCuCCAGCGGCAggaaggagcGCAgCGCgACgCGCa -3'
miRNA:   3'- -GGuGGUCGUCGU---------CGUgGUGgUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 122459 0.66 0.754607
Target:  5'- uCCACggCGGCGGCgGGCGCCGagGCCGg- -3'
miRNA:   3'- -GGUG--GUCGUCG-UCGUGGUggUGGCga -5'
29476 3' -59.5 NC_006151.1 + 89923 0.66 0.754607
Target:  5'- uCCACgCuGUAGCcGCGCC-CCAgguCCGCg -3'
miRNA:   3'- -GGUG-GuCGUCGuCGUGGuGGU---GGCGa -5'
29476 3' -59.5 NC_006151.1 + 15123 0.66 0.754607
Target:  5'- aCCGCCucuuucGCGGCAUCGCCgucucgGCCGCc -3'
miRNA:   3'- -GGUGGucgu--CGUCGUGGUGG------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 139683 0.66 0.754607
Target:  5'- cCCugCGGCAGCGGCGgCGgCAgCaacaGCa -3'
miRNA:   3'- -GGugGUCGUCGUCGUgGUgGU-Gg---CGa -5'
29476 3' -59.5 NC_006151.1 + 139024 0.66 0.754607
Target:  5'- cCCAUCAcGCuGGCA-CACCGCCAUcccaCGCUg -3'
miRNA:   3'- -GGUGGU-CG-UCGUcGUGGUGGUG----GCGA- -5'
29476 3' -59.5 NC_006151.1 + 128404 0.66 0.754607
Target:  5'- gCCACgaCGGCGGCcGUgagGCCGCacaCGCCGCUc -3'
miRNA:   3'- -GGUG--GUCGUCGuCG---UGGUG---GUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 105740 0.66 0.754607
Target:  5'- gCGCCugaAGCAGCGcguggcggcGCGCCuggGCgACCGCg -3'
miRNA:   3'- gGUGG---UCGUCGU---------CGUGG---UGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 84354 0.66 0.754607
Target:  5'- gUCGCCGGCccgcGGCGGUgAUCGCgAUCGCg -3'
miRNA:   3'- -GGUGGUCG----UCGUCG-UGGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 115757 0.66 0.753658
Target:  5'- gCCGCCuGCugcuguccAGCAGCACgGCCuccucggGCgCGCUc -3'
miRNA:   3'- -GGUGGuCG--------UCGUCGUGgUGG-------UG-GCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.