miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 4077 0.66 0.897155
Target:  5'- cGCAcCAGCGGCGccacGguGCGgGCGACGAg -3'
miRNA:   3'- -CGUcGUCGUCGU----CguCGU-CGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 82652 0.66 0.8951
Target:  5'- uGCGGCgagGGCGGCccacccuGCGGCgcgccgcgggcgagGGCGGCGGCc -3'
miRNA:   3'- -CGUCG---UCGUCGu------CGUCG--------------UCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 59941 0.66 0.890215
Target:  5'- uCAGCGGCGGCucGCAGCccucgAGCGcCAcccGCa -3'
miRNA:   3'- cGUCGUCGUCGu-CGUCG-----UCGUuGU---UG- -5'
29476 5' -54.7 NC_006151.1 + 67732 0.66 0.889507
Target:  5'- cGCGGCGcacaggcacggcGCGGCGGCcccgucgGGguGCGGCGucGCg -3'
miRNA:   3'- -CGUCGU------------CGUCGUCG-------UCguCGUUGU--UG- -5'
29476 5' -54.7 NC_006151.1 + 4242 0.66 0.883025
Target:  5'- gGCAGCcGgAGCgGGCAG-GGCAGCAGg -3'
miRNA:   3'- -CGUCGuCgUCG-UCGUCgUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 95301 0.66 0.883025
Target:  5'- cGCGcGCGGCccGGC-GCAGC-GCGGCAAa -3'
miRNA:   3'- -CGU-CGUCG--UCGuCGUCGuCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 104022 0.66 0.883025
Target:  5'- cGCGGCggAGguGgAGCGcgcGCAGCGcCAGCu -3'
miRNA:   3'- -CGUCG--UCguCgUCGU---CGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 2352 0.66 0.883025
Target:  5'- cCAGCAGCGccGCGGC-GCAGaaggcgcGCAACu -3'
miRNA:   3'- cGUCGUCGU--CGUCGuCGUCgu-----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 57447 0.66 0.882293
Target:  5'- cGCGGCGGCccccgcgucggccAGguGCcGCGccGCGGCGGCc -3'
miRNA:   3'- -CGUCGUCG-------------UCguCGuCGU--CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 130445 0.66 0.878594
Target:  5'- uGCAGCGGCGccagaaacauggcguGguGCAG-GGCGAUGGCc -3'
miRNA:   3'- -CGUCGUCGU---------------CguCGUCgUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 113851 0.66 0.875591
Target:  5'- uCGGCAGCuauguuugAGCGaCGGCGGCuccuGCGGCg -3'
miRNA:   3'- cGUCGUCG--------UCGUcGUCGUCGu---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 17491 0.66 0.875591
Target:  5'- gGCGGCGcGCcGCuGCuGCAcCAGCGACg -3'
miRNA:   3'- -CGUCGU-CGuCGuCGuCGUcGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 129752 0.66 0.875591
Target:  5'- cGCuGCAGCAcCAGC-GCgaaGGCGACGAg -3'
miRNA:   3'- -CGuCGUCGUcGUCGuCG---UCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 90404 0.66 0.867919
Target:  5'- aCAGCAuGCAgGCGGCgAGgAGC-GCGACg -3'
miRNA:   3'- cGUCGU-CGU-CGUCG-UCgUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 81669 0.66 0.867919
Target:  5'- cGCAcGgAGCGGCGGUAcGCcuCGGCGACg -3'
miRNA:   3'- -CGU-CgUCGUCGUCGU-CGucGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 57283 0.66 0.867919
Target:  5'- cGCAGCAGgGcguccagcGCGGCcuuGGCGGC-GCGGCc -3'
miRNA:   3'- -CGUCGUCgU--------CGUCG---UCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 130933 0.66 0.867919
Target:  5'- cGCGGgGGCGGgGGCGGCGGgGGg--- -3'
miRNA:   3'- -CGUCgUCGUCgUCGUCGUCgUUguug -5'
29476 5' -54.7 NC_006151.1 + 44581 0.66 0.867919
Target:  5'- aGCuccGCuGCAGCGGCGGaC-GCAuCAGCg -3'
miRNA:   3'- -CGu--CGuCGUCGUCGUC-GuCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 118786 0.67 0.860014
Target:  5'- cGCGGUGGCGcGCGGC-GCGGCG-CAc- -3'
miRNA:   3'- -CGUCGUCGU-CGUCGuCGUCGUuGUug -5'
29476 5' -54.7 NC_006151.1 + 76076 0.67 0.860014
Target:  5'- -gGGCGcCAGCAGCGaCAGgGGCGGCg -3'
miRNA:   3'- cgUCGUcGUCGUCGUcGUCgUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.