miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 136844 0.66 0.391985
Target:  5'- aCGCGgCCGCcgGCCUCgCGCgCCGCGUg- -3'
miRNA:   3'- -GUGCgGGCG--CGGGGgGUG-GGCGCGag -5'
29479 3' -68 NC_006151.1 + 126388 0.66 0.391985
Target:  5'- gCGgGCCCGCGCUgCuggCCAgCCGCGUc- -3'
miRNA:   3'- -GUgCGGGCGCGGgG---GGUgGGCGCGag -5'
29479 3' -68 NC_006151.1 + 107997 0.66 0.391985
Target:  5'- gCGCaGCCCGCcaccGCCgCCgCCACCacCGCGCcCa -3'
miRNA:   3'- -GUG-CGGGCG----CGG-GG-GGUGG--GCGCGaG- -5'
29479 3' -68 NC_006151.1 + 41592 0.66 0.391985
Target:  5'- uGCGaUCCGCGgagcCCgCCCCGgCCGCGCc- -3'
miRNA:   3'- gUGC-GGGCGC----GG-GGGGUgGGCGCGag -5'
29479 3' -68 NC_006151.1 + 123086 0.66 0.384207
Target:  5'- gGCGCCUGUacgcggaccGCCUCUCG-CgGCGCUCg -3'
miRNA:   3'- gUGCGGGCG---------CGGGGGGUgGgCGCGAG- -5'
29479 3' -68 NC_006151.1 + 22305 0.66 0.384207
Target:  5'- cCACGUCCGCGCCgagcgucguCCgggcgaccagcgCCGCCaauaGCGCUg -3'
miRNA:   3'- -GUGCGGGCGCGG---------GG------------GGUGGg---CGCGAg -5'
29479 3' -68 NC_006151.1 + 38918 0.66 0.383435
Target:  5'- cCGCGCCuCGUGgaccaggaggucuUCCCCgaacucuggCGCCCGgCGCUCa -3'
miRNA:   3'- -GUGCGG-GCGC-------------GGGGG---------GUGGGC-GCGAG- -5'
29479 3' -68 NC_006151.1 + 99532 0.66 0.381894
Target:  5'- gGCG-CCGCGCCCgCCCACggagcacgugggcgCgGCGCg- -3'
miRNA:   3'- gUGCgGGCGCGGG-GGGUG--------------GgCGCGag -5'
29479 3' -68 NC_006151.1 + 67040 0.66 0.376532
Target:  5'- cCACGCCgagCGCGCCaccgCCUACCUGCugGCg- -3'
miRNA:   3'- -GUGCGG---GCGCGGg---GGGUGGGCG--CGag -5'
29479 3' -68 NC_006151.1 + 77519 0.66 0.376532
Target:  5'- --aGCUgGCGCgCCUCGgCCGCGCg- -3'
miRNA:   3'- gugCGGgCGCGgGGGGUgGGCGCGag -5'
29479 3' -68 NC_006151.1 + 82530 0.66 0.376532
Target:  5'- uGCGCgUgucguugaGCGCCCCCaGCCCGCcgaGCUg -3'
miRNA:   3'- gUGCGgG--------CGCGGGGGgUGGGCG---CGAg -5'
29479 3' -68 NC_006151.1 + 113798 0.66 0.376532
Target:  5'- aCACGCgCUGCugcgGCgCCaCgGCCuCGCGCUCg -3'
miRNA:   3'- -GUGCG-GGCG----CGgGG-GgUGG-GCGCGAG- -5'
29479 3' -68 NC_006151.1 + 15269 0.66 0.376532
Target:  5'- -uCGCCCGagcagaGCgCCCCGCUgcgcagCGCGCUg -3'
miRNA:   3'- guGCGGGCg-----CGgGGGGUGG------GCGCGAg -5'
29479 3' -68 NC_006151.1 + 33937 0.66 0.376532
Target:  5'- gAgGCCCGCGCgCCCCGg--GgGCUCg -3'
miRNA:   3'- gUgCGGGCGCGgGGGGUgggCgCGAG- -5'
29479 3' -68 NC_006151.1 + 54947 0.66 0.376532
Target:  5'- aCGCGCUgcgcgagcaCGCGCgCCUCugCCaGCuGCUCa -3'
miRNA:   3'- -GUGCGG---------GCGCGgGGGGugGG-CG-CGAG- -5'
29479 3' -68 NC_006151.1 + 73122 0.66 0.376532
Target:  5'- gCGCGCCCGCGCgggUUgCACgCGCGC-Cg -3'
miRNA:   3'- -GUGCGGGCGCGg--GGgGUGgGCGCGaG- -5'
29479 3' -68 NC_006151.1 + 83237 0.66 0.376532
Target:  5'- aGCGCggCGCGCgCCCCCAgUCGuCGCg- -3'
miRNA:   3'- gUGCGg-GCGCG-GGGGGUgGGC-GCGag -5'
29479 3' -68 NC_006151.1 + 84443 0.66 0.376532
Target:  5'- gCGCgGCCCaUGuCCCCCCGCgccauggaCCGCGCg- -3'
miRNA:   3'- -GUG-CGGGcGC-GGGGGGUG--------GGCGCGag -5'
29479 3' -68 NC_006151.1 + 100497 0.66 0.376532
Target:  5'- gGCGCCCGUGUUCCggacgcugugcgCCgACCaCGCGCg- -3'
miRNA:   3'- gUGCGGGCGCGGGG------------GG-UGG-GCGCGag -5'
29479 3' -68 NC_006151.1 + 33708 0.66 0.376532
Target:  5'- gCACGCUcucucuCGCacaCCCCCCAcaucacacucucCCCGCGCa- -3'
miRNA:   3'- -GUGCGG------GCGc--GGGGGGU------------GGGCGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.