miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29480 3' -51.1 NC_006151.1 + 79357 0.66 0.992404
Target:  5'- gGCCGAAGAAaauauugauGGAUuaucggcaaaAUAUCGGCCccGCGAu -3'
miRNA:   3'- -CGGCUUUUU---------CCUA----------UGUGGUCGG--CGCU- -5'
29480 3' -51.1 NC_006151.1 + 4773 0.66 0.992404
Target:  5'- -aUGAAGAcGGGcACGggcCCGGCCGCGGc -3'
miRNA:   3'- cgGCUUUUuCCUaUGU---GGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 17671 0.66 0.992404
Target:  5'- aCCGAcGAGAGGA-ACAgCAGagaCGCGGa -3'
miRNA:   3'- cGGCU-UUUUCCUaUGUgGUCg--GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 3561 0.66 0.992404
Target:  5'- cCCGAGuccGAGGGAgcgGCGCUugcGCCGgGGc -3'
miRNA:   3'- cGGCUU---UUUCCUa--UGUGGu--CGGCgCU- -5'
29480 3' -51.1 NC_006151.1 + 69527 0.66 0.992404
Target:  5'- cGCCGcgcGAGGGcgcccUGCAUCAGcCCGCu- -3'
miRNA:   3'- -CGGCuuuUUCCU-----AUGUGGUC-GGCGcu -5'
29480 3' -51.1 NC_006151.1 + 78380 0.66 0.992297
Target:  5'- aGaaGggGGAGGAggggGCgGCCacggcggcucucgGGCCGCGAg -3'
miRNA:   3'- -CggCuuUUUCCUa---UG-UGG-------------UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 123501 0.66 0.992297
Target:  5'- cCUGAAGGAGGAgcuggcGCGCUucaugguGGCCcGCGAu -3'
miRNA:   3'- cGGCUUUUUCCUa-----UGUGG-------UCGG-CGCU- -5'
29480 3' -51.1 NC_006151.1 + 119269 0.66 0.992078
Target:  5'- gGCCGGGAacccgcagacggacAAGGAcggGCGCguGCUGCu- -3'
miRNA:   3'- -CGGCUUU--------------UUCCUa--UGUGguCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 5914 0.66 0.991275
Target:  5'- uGCCGggGucGGcgGCcggggcccggaGCCGGCC-CGGg -3'
miRNA:   3'- -CGGCuuUuuCCuaUG-----------UGGUCGGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 55023 0.66 0.991275
Target:  5'- cGCCGA---GGGGcAC-CCGGCCGgCGc -3'
miRNA:   3'- -CGGCUuuuUCCUaUGuGGUCGGC-GCu -5'
29480 3' -51.1 NC_006151.1 + 68454 0.66 0.991275
Target:  5'- cGCuCGAGcacGGGGUcCACCAG-CGCGGc -3'
miRNA:   3'- -CG-GCUUuu-UCCUAuGUGGUCgGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 69193 0.66 0.991275
Target:  5'- cGCCaGggGcucgcuccGGGGcccGCGCCGGCCGCc- -3'
miRNA:   3'- -CGG-CuuU--------UUCCua-UGUGGUCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 138628 0.66 0.991275
Target:  5'- cGCCGcc-GGGGGcGCGCCGGaCUGgGAg -3'
miRNA:   3'- -CGGCuuuUUCCUaUGUGGUC-GGCgCU- -5'
29480 3' -51.1 NC_006151.1 + 6260 0.66 0.991275
Target:  5'- cGUCGggGccGGAcGCGaugcccucuuccUCGGCCGCGGc -3'
miRNA:   3'- -CGGCuuUuuCCUaUGU------------GGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 65175 0.66 0.991275
Target:  5'- cGCgCGAGGc-GGAaGCGCgGGuCCGCGAg -3'
miRNA:   3'- -CG-GCUUUuuCCUaUGUGgUC-GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 114406 0.66 0.991275
Target:  5'- cCCGAGAAGucGGugcacGUGCACCA-CCGCGu -3'
miRNA:   3'- cGGCUUUUU--CC-----UAUGUGGUcGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 122672 0.66 0.991275
Target:  5'- cGCCGcgccGAGG-UGCGCgcggCGGCCGUGGa -3'
miRNA:   3'- -CGGCuuu-UUCCuAUGUG----GUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 91077 0.66 0.990536
Target:  5'- aGUCGAGgccgcgggcgagcgcGAAGGucguC-CCGGCCGCGGc -3'
miRNA:   3'- -CGGCUU---------------UUUCCuau-GuGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 91532 0.66 0.990017
Target:  5'- -aCGAGGAAGGcGUGCGCgaggugcgCGGCCaGCGGg -3'
miRNA:   3'- cgGCUUUUUCC-UAUGUG--------GUCGG-CGCU- -5'
29480 3' -51.1 NC_006151.1 + 73246 0.66 0.990017
Target:  5'- gGCCGAAGAcGGGcacggGCGCCAGgCGg-- -3'
miRNA:   3'- -CGGCUUUUuCCUa----UGUGGUCgGCgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.