miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 3' -64.6 NC_006151.1 + 130583 0.66 0.570631
Target:  5'- aUCUGGaGGUGGugcagcggcaccagcGCCUCCcaGGCGUcCUGGUc -3'
miRNA:   3'- -GGGCC-CCGCC---------------CGGAGG--CCGCA-GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 133650 0.66 0.566852
Target:  5'- gUCCGGGuGCGagaGGCgCUgCCGGCG-CggcGGCg -3'
miRNA:   3'- -GGGCCC-CGC---CCG-GA-GGCCGCaGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 104273 0.66 0.566852
Target:  5'- gCgCGGcGGCGGGCCcgCCgcugcaGGCG-CUgcAGCg -3'
miRNA:   3'- -GgGCC-CCGCCCGGa-GG------CCGCaGA--UCG- -5'
29483 3' -64.6 NC_006151.1 + 82295 0.66 0.566852
Target:  5'- gCCgCGGGGCaGcGcGCCUCCG-CGUCc-GCg -3'
miRNA:   3'- -GG-GCCCCG-C-C-CGGAGGCcGCAGauCG- -5'
29483 3' -64.6 NC_006151.1 + 79995 0.66 0.566852
Target:  5'- cCUCGGGGCGGGUaaaaaaUUCUugaacGCGUUcGGCg -3'
miRNA:   3'- -GGGCCCCGCCCG------GAGGc----CGCAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 36035 0.66 0.566852
Target:  5'- uCCCGGcgccGCGGcuCCUCCGGCGaggaucuccUCUucGGCc -3'
miRNA:   3'- -GGGCCc---CGCCc-GGAGGCCGC---------AGA--UCG- -5'
29483 3' -64.6 NC_006151.1 + 68015 0.66 0.565908
Target:  5'- gCUCGGcGGCGuccagguccaggcGGCCcgCCGGCG-CggcgGGCa -3'
miRNA:   3'- -GGGCC-CCGC-------------CCGGa-GGCCGCaGa---UCG- -5'
29483 3' -64.6 NC_006151.1 + 3954 0.66 0.557432
Target:  5'- cUCCGcGGGCccGGGCCgCgCGGCGgcCUcGGCg -3'
miRNA:   3'- -GGGC-CCCG--CCCGGaG-GCCGCa-GA-UCG- -5'
29483 3' -64.6 NC_006151.1 + 130720 0.66 0.548057
Target:  5'- gCCCGGGggcccGCGcGGCCg-CGGCG-C-AGCg -3'
miRNA:   3'- -GGGCCC-----CGC-CCGGagGCCGCaGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 33957 0.66 0.548057
Target:  5'- gCUCGGGGCGGGaCg-CGGCG-CccGCg -3'
miRNA:   3'- -GGGCCCCGCCCgGagGCCGCaGauCG- -5'
29483 3' -64.6 NC_006151.1 + 38312 0.66 0.548057
Target:  5'- gCCCGGGcccGCGGaGCCcgcgcCCGGCcugcccccgcUCUGGCc -3'
miRNA:   3'- -GGGCCC---CGCC-CGGa----GGCCGc---------AGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 136989 0.66 0.548057
Target:  5'- gCCgGGcGGCGGGCgCgcgcgCaCGGCG-CUGGg -3'
miRNA:   3'- -GGgCC-CCGCCCG-Ga----G-GCCGCaGAUCg -5'
29483 3' -64.6 NC_006151.1 + 6120 0.66 0.548057
Target:  5'- -aCGGGGC-GGCCUCgUGGC-UCcGGCc -3'
miRNA:   3'- ggGCCCCGcCCGGAG-GCCGcAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 13435 0.66 0.548057
Target:  5'- cCCCGGGGCccgcauuGGCCggucCCGGacgccCGUCccGCg -3'
miRNA:   3'- -GGGCCCCGc------CCGGa---GGCC-----GCAGauCG- -5'
29483 3' -64.6 NC_006151.1 + 141661 0.66 0.547122
Target:  5'- cCCCGcGGGCucguuguGGaggcaugucuGCCUCCcacGGCGgCUGGCg -3'
miRNA:   3'- -GGGC-CCCG-------CC----------CGGAGG---CCGCaGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 90136 0.66 0.538733
Target:  5'- -gCGGGGCGGuagugcGCgUCgGGCccgCUGGCg -3'
miRNA:   3'- ggGCCCCGCC------CGgAGgCCGca-GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 64204 0.66 0.538733
Target:  5'- cCCCGGGcagguccggcGUGGGCgCcUCGGCGUacagGGCc -3'
miRNA:   3'- -GGGCCC----------CGCCCG-GaGGCCGCAga--UCG- -5'
29483 3' -64.6 NC_006151.1 + 125250 0.66 0.538733
Target:  5'- cCCCGGcccGGCGGggacgcccgaGCCgCCGGcCGUCaacGGCa -3'
miRNA:   3'- -GGGCC---CCGCC----------CGGaGGCC-GCAGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 141473 0.66 0.537803
Target:  5'- gCCgGGGGCGccgaguccgaGaGCCUCCgcggcgacgGGCGUCUccacgggggccgaGGCg -3'
miRNA:   3'- -GGgCCCCGC----------C-CGGAGG---------CCGCAGA-------------UCG- -5'
29483 3' -64.6 NC_006151.1 + 142586 0.66 0.529463
Target:  5'- cUCCGGucccGGCgGGGCuCUCCucuaGUCUGGCa -3'
miRNA:   3'- -GGGCC----CCG-CCCG-GAGGccg-CAGAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.