miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 57457 0.66 0.996355
Target:  5'- cCCGCgucgGCCAggugccgCgccgCggCGGCCUCGCa -3'
miRNA:   3'- -GGCGa---UGGUa------Gaa--GuaGCUGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 50836 0.66 0.996355
Target:  5'- cCCGCgccGCCGUCcccUCggCGGCCgcccucccgCGCCc -3'
miRNA:   3'- -GGCGa--UGGUAGa--AGuaGCUGGa--------GUGG- -5'
29483 5' -50.7 NC_006151.1 + 137227 0.66 0.996355
Target:  5'- gCCGUgACCAacaucguccUCgaCGUCGACUuUCGCCu -3'
miRNA:   3'- -GGCGaUGGU---------AGaaGUAGCUGG-AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 86237 0.66 0.996355
Target:  5'- gCGCUGCgaCAUCggCGcCGugCUgGCCg -3'
miRNA:   3'- gGCGAUG--GUAGaaGUaGCugGAgUGG- -5'
29483 5' -50.7 NC_006151.1 + 38154 0.66 0.996355
Target:  5'- gCCGCggacuCUGUCgcccUCGUCGcCCgCACCg -3'
miRNA:   3'- -GGCGau---GGUAGa---AGUAGCuGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 75640 0.66 0.996355
Target:  5'- -gGCuUGCCGUCgUCGggGGCCggcUCGCCg -3'
miRNA:   3'- ggCG-AUGGUAGaAGUagCUGG---AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 51623 0.66 0.995731
Target:  5'- aCCGC-GCCGUCgcgCAgcgCGGCCaauauaugcUCGCUg -3'
miRNA:   3'- -GGCGaUGGUAGaa-GUa--GCUGG---------AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 25016 0.66 0.995731
Target:  5'- cCCGCUGCUGUCgcCGUCG-CCgUCGa- -3'
miRNA:   3'- -GGCGAUGGUAGaaGUAGCuGG-AGUgg -5'
29483 5' -50.7 NC_006151.1 + 6272 0.66 0.995731
Target:  5'- aCGCgaUGCCcUCUUCcUCGGCCgcggcggcggcCGCCa -3'
miRNA:   3'- gGCG--AUGGuAGAAGuAGCUGGa----------GUGG- -5'
29483 5' -50.7 NC_006151.1 + 37790 0.66 0.995528
Target:  5'- gCCGCUACgAUCgcacccagaagaccUUCAUCcugcagaGCCUcCGCCg -3'
miRNA:   3'- -GGCGAUGgUAG--------------AAGUAGc------UGGA-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 135354 0.66 0.995022
Target:  5'- uCCGCgaGCCGcCgcgCGUUGGCCgcgugCGCCg -3'
miRNA:   3'- -GGCGa-UGGUaGaa-GUAGCUGGa----GUGG- -5'
29483 5' -50.7 NC_006151.1 + 85463 0.66 0.995022
Target:  5'- gCCGCgGCCAgaaccUCUUCcUCGGCgaggacgCGCCg -3'
miRNA:   3'- -GGCGaUGGU-----AGAAGuAGCUGga-----GUGG- -5'
29483 5' -50.7 NC_006151.1 + 125681 0.66 0.995022
Target:  5'- -aGCUcCuCAUCUcgCG-CGACCUCAUCg -3'
miRNA:   3'- ggCGAuG-GUAGAa-GUaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 60680 0.66 0.994221
Target:  5'- gCCGCcGCCGUCcUCccgCGcGCC-CGCCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGua-GC-UGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 130906 0.66 0.994221
Target:  5'- gCCGUcGCCGUCgUCggUGGCCggGCCc -3'
miRNA:   3'- -GGCGaUGGUAGaAGuaGCUGGagUGG- -5'
29483 5' -50.7 NC_006151.1 + 59425 0.66 0.994221
Target:  5'- -aGCggcGCCAgcUCggCGUCGGCCgcCGCCg -3'
miRNA:   3'- ggCGa--UGGU--AGaaGUAGCUGGa-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 13182 0.66 0.994221
Target:  5'- gCCGCgGCCGUC-UCGg-GGCCcgcggCGCCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGUagCUGGa----GUGG- -5'
29483 5' -50.7 NC_006151.1 + 98507 0.66 0.994136
Target:  5'- cCCGCUGCUggagcuccuggggGUCgUCAacggCGACgaCACCa -3'
miRNA:   3'- -GGCGAUGG-------------UAGaAGUa---GCUGgaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 107819 0.66 0.99332
Target:  5'- cCCGCcGCCGg--UCAUCaACC-CGCCc -3'
miRNA:   3'- -GGCGaUGGUagaAGUAGcUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 115761 0.66 0.99332
Target:  5'- cCUGCUGCUGUCcagCAgcaCGGCCUCcUCg -3'
miRNA:   3'- -GGCGAUGGUAGaa-GUa--GCUGGAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.