miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 64371 0.66 0.717602
Target:  5'- cAGCGCacGGUCGAGGCCGUgGCcagCCCg -3'
miRNA:   3'- -UCGCGcaCUGGCUCCGGUA-CGa--GGGg -5'
29484 3' -60.7 NC_006151.1 + 24323 0.66 0.717602
Target:  5'- gGGCGCG-GA-UGAGGUCGaucaggUGCaucUCCCCg -3'
miRNA:   3'- -UCGCGCaCUgGCUCCGGU------ACG---AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 123065 0.66 0.717602
Target:  5'- uGCGCGacGCCGAGcGCCGgcgGCgCCUg -3'
miRNA:   3'- uCGCGCacUGGCUC-CGGUa--CGaGGGg -5'
29484 3' -60.7 NC_006151.1 + 39469 0.66 0.717602
Target:  5'- cGUGCGcUGGcCCGGGuGCCGcgaGCUCCgCg -3'
miRNA:   3'- uCGCGC-ACU-GGCUC-CGGUa--CGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 31203 0.66 0.717602
Target:  5'- --aGUGUGGCCcgcguccAGGCCggGC-CCCCg -3'
miRNA:   3'- ucgCGCACUGGc------UCCGGuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 37318 0.66 0.717602
Target:  5'- gGGCcccCGccGACCGAcgGGCCGcUGCUCaCCCc -3'
miRNA:   3'- -UCGc--GCa-CUGGCU--CCGGU-ACGAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 101777 0.66 0.711794
Target:  5'- cGCGgGgccCCGGGGCCAUcccguccucgccgucGC-CCCCg -3'
miRNA:   3'- uCGCgCacuGGCUCCGGUA---------------CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 29151 0.66 0.70791
Target:  5'- cGCGCGUGACCc--GCCGcgaccuCUCCCUu -3'
miRNA:   3'- uCGCGCACUGGcucCGGUac----GAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 2536 0.66 0.70791
Target:  5'- gAGCGCG-GAgCGcuggcGGGCCAUG-UCCUUg -3'
miRNA:   3'- -UCGCGCaCUgGC-----UCCGGUACgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 8239 0.66 0.70791
Target:  5'- cGGCGgGgagGGCCG-GGCCGgcGCgccgggacgCCCCu -3'
miRNA:   3'- -UCGCgCa--CUGGCuCCGGUa-CGa--------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 57537 0.66 0.70791
Target:  5'- cGGCGCGgccgcgGGCaCGucGCCGaGCacgCCCCa -3'
miRNA:   3'- -UCGCGCa-----CUG-GCucCGGUaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 57590 0.66 0.70791
Target:  5'- aGGCGCacGUGACC-AGGCCGg---CCUCg -3'
miRNA:   3'- -UCGCG--CACUGGcUCCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 99252 0.66 0.70791
Target:  5'- aGGCGCucGUGACCGcGGGCUucacGCgCCgCCa -3'
miRNA:   3'- -UCGCG--CACUGGC-UCCGGua--CGaGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 117510 0.66 0.698156
Target:  5'- aAGCGCG-GACUcacGGGCCGcucggggGC-CCCCu -3'
miRNA:   3'- -UCGCGCaCUGGc--UCCGGUa------CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 74015 0.66 0.698156
Target:  5'- aGGgGCGUcGugCGcucGGCCAUGUUCgUCa -3'
miRNA:   3'- -UCgCGCA-CugGCu--CCGGUACGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 122244 0.66 0.698156
Target:  5'- uGUGCGUGACggccaaccagggCGAGGCCAcgcacaggcgccUGCUCg-- -3'
miRNA:   3'- uCGCGCACUG------------GCUCCGGU------------ACGAGggg -5'
29484 3' -60.7 NC_006151.1 + 99917 0.66 0.698156
Target:  5'- gGGCGCGcGACUacGGCgCcgGCcucaUCCCCa -3'
miRNA:   3'- -UCGCGCaCUGGcuCCG-GuaCG----AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 71707 0.66 0.698156
Target:  5'- cAGcCGCGaGGCCGAGGCgAUccagGC-CUCCa -3'
miRNA:   3'- -UC-GCGCaCUGGCUCCGgUA----CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 34014 0.66 0.698156
Target:  5'- cGGCGCGccGGCCc-GGCC---CUCCCCg -3'
miRNA:   3'- -UCGCGCa-CUGGcuCCGGuacGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 31773 0.66 0.698156
Target:  5'- gGGCGCGc-GCCG-GGCg--GCUCUCCu -3'
miRNA:   3'- -UCGCGCacUGGCuCCGguaCGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.