miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 5' -52.8 NC_006151.1 + 78494 0.66 0.979033
Target:  5'- cGUGAACGCCgccguggugCACGCCCcCG-CGAUcGCg -3'
miRNA:   3'- -CGUUUGUGG---------GUGCGGGaGCaGCUA-UG- -5'
29484 5' -52.8 NC_006151.1 + 139577 0.66 0.979033
Target:  5'- cGCGAGCGCCUgggcucGCGCCC-CccCGAgcgGCg -3'
miRNA:   3'- -CGUUUGUGGG------UGCGGGaGcaGCUa--UG- -5'
29484 5' -52.8 NC_006151.1 + 106951 0.66 0.979033
Target:  5'- gGCGAGCGCCugCugGCgCUCGaCGAc-- -3'
miRNA:   3'- -CGUUUGUGG--GugCGgGAGCaGCUaug -5'
29484 5' -52.8 NC_006151.1 + 63804 0.66 0.978333
Target:  5'- cGCcAGCGCCUcgccgggccccgggGCGCCCUCGaaGAa-- -3'
miRNA:   3'- -CGuUUGUGGG--------------UGCGGGAGCagCUaug -5'
29484 5' -52.8 NC_006151.1 + 11482 0.66 0.976635
Target:  5'- -gGAACACCCugaGCCUUCGcUGAgUGCu -3'
miRNA:   3'- cgUUUGUGGGug-CGGGAGCaGCU-AUG- -5'
29484 5' -52.8 NC_006151.1 + 88696 0.66 0.976635
Target:  5'- aGCAcGCGCCacguguagACGCCCUCGgucUCGGc-- -3'
miRNA:   3'- -CGUuUGUGGg-------UGCGGGAGC---AGCUaug -5'
29484 5' -52.8 NC_006151.1 + 30565 0.66 0.976635
Target:  5'- cGCAcGCGccguCCCGCgGCCC-CGUCGGg-- -3'
miRNA:   3'- -CGUuUGU----GGGUG-CGGGaGCAGCUaug -5'
29484 5' -52.8 NC_006151.1 + 38809 0.66 0.976635
Target:  5'- cCGAGCAcCCCGCGCCCgaCGgCGGc-- -3'
miRNA:   3'- cGUUUGU-GGGUGCGGGa-GCaGCUaug -5'
29484 5' -52.8 NC_006151.1 + 73423 0.66 0.974041
Target:  5'- aGCccACGCCCAgGUCCaCGUUGGcGCg -3'
miRNA:   3'- -CGuuUGUGGGUgCGGGaGCAGCUaUG- -5'
29484 5' -52.8 NC_006151.1 + 50121 0.66 0.974041
Target:  5'- cGCGGugcGCGCCCgACGCCCaCG-CGAg-- -3'
miRNA:   3'- -CGUU---UGUGGG-UGCGGGaGCaGCUaug -5'
29484 5' -52.8 NC_006151.1 + 78419 0.66 0.974041
Target:  5'- cGCGAGCgccgugGCCCACGCCgUCaacCGcGUGCu -3'
miRNA:   3'- -CGUUUG------UGGGUGCGGgAGca-GC-UAUG- -5'
29484 5' -52.8 NC_006151.1 + 64006 0.66 0.974041
Target:  5'- uGCGgugcGGCGCCagGCGCCCgaucgCGUCGcgAUc -3'
miRNA:   3'- -CGU----UUGUGGg-UGCGGGa----GCAGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 71226 0.66 0.974041
Target:  5'- cGUggGCGCgCGCGCCgacccCGUCGAgUACc -3'
miRNA:   3'- -CGuuUGUGgGUGCGGga---GCAGCU-AUG- -5'
29484 5' -52.8 NC_006151.1 + 17454 0.66 0.973771
Target:  5'- aGCGcAGCACCaCGuguugccgcggcgUGUCCUCGUCGGcgGCg -3'
miRNA:   3'- -CGU-UUGUGG-GU-------------GCGGGAGCAGCUa-UG- -5'
29484 5' -52.8 NC_006151.1 + 38911 0.66 0.971245
Target:  5'- -aGGugGCCCGCG-CCUCGUgGAc-- -3'
miRNA:   3'- cgUUugUGGGUGCgGGAGCAgCUaug -5'
29484 5' -52.8 NC_006151.1 + 68409 0.66 0.971245
Target:  5'- gGCGcGCGCCCGCccCCCUCGcccCGcUACa -3'
miRNA:   3'- -CGUuUGUGGGUGc-GGGAGCa--GCuAUG- -5'
29484 5' -52.8 NC_006151.1 + 127491 0.66 0.971245
Target:  5'- cGCGGAC-CCCGCGCCggaaGcUGGUGCg -3'
miRNA:   3'- -CGUUUGuGGGUGCGGgag-CaGCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 111556 0.66 0.969467
Target:  5'- aGCGGccGCGugUCCACGCCCccggcgcgcuugaugUCGUCGAg-- -3'
miRNA:   3'- -CGUU--UGU--GGGUGCGGG---------------AGCAGCUaug -5'
29484 5' -52.8 NC_006151.1 + 136884 0.66 0.968239
Target:  5'- -gGAGCGCCuCGCGCCCcaCGgcugGGUGCg -3'
miRNA:   3'- cgUUUGUGG-GUGCGGGa-GCag--CUAUG- -5'
29484 5' -52.8 NC_006151.1 + 118799 0.66 0.968239
Target:  5'- gGCGcGGCGCaCCugGCCUUCGaCGAg-- -3'
miRNA:   3'- -CGU-UUGUG-GGugCGGGAGCaGCUaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.