miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29485 3' -53.8 NC_006151.1 + 14486 0.66 0.975467
Target:  5'- cGGg-UgGGCGGggGUCGGGAGgGAUCg -3'
miRNA:   3'- -CCagAgCUGCCagUAGCUCUCgCUGG- -5'
29485 3' -53.8 NC_006151.1 + 24446 0.66 0.975467
Target:  5'- uGGUgUCGuaGCGGUCGcgCGcGAGC-ACCu -3'
miRNA:   3'- -CCAgAGC--UGCCAGUa-GCuCUCGcUGG- -5'
29485 3' -53.8 NC_006151.1 + 28155 0.66 0.975467
Target:  5'- cGGUCgauccccgUCGGC-GUCGUUGGG-GCGGCg -3'
miRNA:   3'- -CCAG--------AGCUGcCAGUAGCUCuCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 131819 0.66 0.972852
Target:  5'- cGGcCUCGGCuagcGUCAcCGuggugaugagcGGGGCGGCCg -3'
miRNA:   3'- -CCaGAGCUGc---CAGUaGC-----------UCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 85109 0.66 0.972852
Target:  5'- --aCUCGGCGc---UCGAGAGCG-CCg -3'
miRNA:   3'- ccaGAGCUGCcaguAGCUCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 64528 0.66 0.972852
Target:  5'- aGGcCgCcGCGGccgCGUCGGGGGCGGCg -3'
miRNA:   3'- -CCaGaGcUGCCa--GUAGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 130516 0.66 0.97258
Target:  5'- cGUCUCGggcGCGGgcgucgCGUacacgcccccgcgCGAGGGCGGCg -3'
miRNA:   3'- cCAGAGC---UGCCa-----GUA-------------GCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 106964 0.66 0.970041
Target:  5'- uGGcgCUCGACGacaacccCAUCGAGAacGCGugCc -3'
miRNA:   3'- -CCa-GAGCUGCca-----GUAGCUCU--CGCugG- -5'
29485 3' -53.8 NC_006151.1 + 41176 0.66 0.970041
Target:  5'- uGGUC-CuGCGGUgGUCGAGGGgGGu- -3'
miRNA:   3'- -CCAGaGcUGCCAgUAGCUCUCgCUgg -5'
29485 3' -53.8 NC_006151.1 + 84998 0.66 0.970041
Target:  5'- aGGUCUCG-CGcGcCAUCGAcucGcGCGACg -3'
miRNA:   3'- -CCAGAGCuGC-CaGUAGCU---CuCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 61294 0.66 0.969159
Target:  5'- cGGaagCUCGACGGgcgCGUCGcgcugcagguccagGGAGacgccCGGCCa -3'
miRNA:   3'- -CCa--GAGCUGCCa--GUAGC--------------UCUC-----GCUGG- -5'
29485 3' -53.8 NC_006151.1 + 140354 0.66 0.967028
Target:  5'- uGG-CUCGcaucgccCGcGUCGUCGAGcGCGGCUc -3'
miRNA:   3'- -CCaGAGCu------GC-CAGUAGCUCuCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 127425 0.66 0.967028
Target:  5'- gGGUCgccUCGGCGcUCGUgcgCGAGAGcCGGCg -3'
miRNA:   3'- -CCAG---AGCUGCcAGUA---GCUCUC-GCUGg -5'
29485 3' -53.8 NC_006151.1 + 125190 0.66 0.967028
Target:  5'- cGGcCUCGcCGG-CGUCGuGGgccccGCGGCCc -3'
miRNA:   3'- -CCaGAGCuGCCaGUAGCuCU-----CGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 88721 0.66 0.967028
Target:  5'- cGGUCUCGGC-GUCcgCc---GCGGCCa -3'
miRNA:   3'- -CCAGAGCUGcCAGuaGcucuCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 95639 0.66 0.967028
Target:  5'- aGGUgCgaggCG-CGGUCGUCaaAGAGCGuCCa -3'
miRNA:   3'- -CCA-Ga---GCuGCCAGUAGc-UCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 72626 0.66 0.963807
Target:  5'- cGGUC-CGGCGGUCccgCGGucccGCGGCUc -3'
miRNA:   3'- -CCAGaGCUGCCAGua-GCUcu--CGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 3419 0.66 0.963807
Target:  5'- gGGUCUCGcCGGc---CGGGAcGCGGCg -3'
miRNA:   3'- -CCAGAGCuGCCaguaGCUCU-CGCUGg -5'
29485 3' -53.8 NC_006151.1 + 133693 0.66 0.963807
Target:  5'- -----aGGCGGUCucGUCGGcGGCGACCc -3'
miRNA:   3'- ccagagCUGCCAG--UAGCUcUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 4195 0.66 0.963807
Target:  5'- --cCUCGaggcagGCGGgcc-CGAGGGCGGCCg -3'
miRNA:   3'- ccaGAGC------UGCCaguaGCUCUCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.