miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 2559 0.66 0.854172
Target:  5'- uGUCCUugcagCCGuCCACgGUGGGgAGC-ACGCg -3'
miRNA:   3'- -UAGGA-----GGU-GGUG-CACCUgUCGcUGCG- -5'
29486 3' -57.5 NC_006151.1 + 136492 0.66 0.854172
Target:  5'- cGUCCUCCGggacuacaucucCCACGaccgGGGCAGCcucaagcuccccGACcGCg -3'
miRNA:   3'- -UAGGAGGU------------GGUGCa---CCUGUCG------------CUG-CG- -5'
29486 3' -57.5 NC_006151.1 + 108092 0.66 0.854172
Target:  5'- -aCCaUCCGCCGCGaccGCGGCcGCGCa -3'
miRNA:   3'- uaGG-AGGUGGUGCaccUGUCGcUGCG- -5'
29486 3' -57.5 NC_006151.1 + 101664 0.66 0.854172
Target:  5'- --gCUCUACgGCGUGGGCGa-GACGUa -3'
miRNA:   3'- uagGAGGUGgUGCACCUGUcgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 92716 0.66 0.854172
Target:  5'- aGUUCaUCCAgCACGUGGugGccaugcucacGCcGGCGCg -3'
miRNA:   3'- -UAGG-AGGUgGUGCACCugU----------CG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 50367 0.66 0.854172
Target:  5'- -gUCUCCGCCgGCGgGGGCGa-GACGCg -3'
miRNA:   3'- uaGGAGGUGG-UGCaCCUGUcgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 135352 0.66 0.854172
Target:  5'- uGUCCgcgagCCGCCGCGcguUGGccGCGuGCGcCGCg -3'
miRNA:   3'- -UAGGa----GGUGGUGC---ACC--UGU-CGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 119471 0.66 0.854172
Target:  5'- -gCCgUgCGCUACGUGGccgGCAGCcucGACGCc -3'
miRNA:   3'- uaGG-AgGUGGUGCACC---UGUCG---CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 65077 0.66 0.854172
Target:  5'- aGUCCaUCAgcacCCGCGUGGGcCGGUcGCGCg -3'
miRNA:   3'- -UAGGaGGU----GGUGCACCU-GUCGcUGCG- -5'
29486 3' -57.5 NC_006151.1 + 101143 0.66 0.849477
Target:  5'- uUCCUgCGCCuggucuucacgaacgGCGUGGAggccgcccugaCGGCcGACGCc -3'
miRNA:   3'- uAGGAgGUGG---------------UGCACCU-----------GUCG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 39597 0.66 0.846307
Target:  5'- -gCCUCUGCCGCcaGGACAaCGuGCGCu -3'
miRNA:   3'- uaGGAGGUGGUGcaCCUGUcGC-UGCG- -5'
29486 3' -57.5 NC_006151.1 + 84487 0.66 0.846307
Target:  5'- cUUCgaggCCGCUGCGaucccGGGCAGCG-CGCg -3'
miRNA:   3'- uAGGa---GGUGGUGCa----CCUGUCGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 26341 0.66 0.846307
Target:  5'- -cCCgCC-UCACG-GGGCGGCGGCGg -3'
miRNA:   3'- uaGGaGGuGGUGCaCCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 139636 0.66 0.838251
Target:  5'- cAUCCggcgCCGgCGCGggGGucGCGGCgGGCGCg -3'
miRNA:   3'- -UAGGa---GGUgGUGCa-CC--UGUCG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 127791 0.66 0.838251
Target:  5'- cUCCcccgCCGCCGCGc--GCGGgGGCGCg -3'
miRNA:   3'- uAGGa---GGUGGUGCaccUGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 118758 0.66 0.838251
Target:  5'- -gCCgugCCACgCGCGUGcGgaaccuggacGCGGUGGCGCg -3'
miRNA:   3'- uaGGa--GGUG-GUGCAC-C----------UGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 104126 0.66 0.838251
Target:  5'- -gCCUgCGCgACGUGG-CGGcCGACcGCg -3'
miRNA:   3'- uaGGAgGUGgUGCACCuGUC-GCUG-CG- -5'
29486 3' -57.5 NC_006151.1 + 82310 0.66 0.838251
Target:  5'- -gCCUCCGcguCCGCGaGGACGGCcaccucCGCg -3'
miRNA:   3'- uaGGAGGU---GGUGCaCCUGUCGcu----GCG- -5'
29486 3' -57.5 NC_006151.1 + 57509 0.66 0.838251
Target:  5'- --gCUCgGCCGCG-GcGGCGGCGGcCGCc -3'
miRNA:   3'- uagGAGgUGGUGCaC-CUGUCGCU-GCG- -5'
29486 3' -57.5 NC_006151.1 + 54804 0.66 0.838251
Target:  5'- -cCCggcaCCGgCGCGUGcuGGCGcGCGACGCg -3'
miRNA:   3'- uaGGa---GGUgGUGCAC--CUGU-CGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.