miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 132015 0.7 0.598422
Target:  5'- gAUCCg-CACCugGUGcGAgagguagcCGGCGGCGCg -3'
miRNA:   3'- -UAGGagGUGGugCAC-CU--------GUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 129684 0.74 0.39132
Target:  5'- -aCCgUCCgGCCGcCGUGGACcGCGGCGCc -3'
miRNA:   3'- uaGG-AGG-UGGU-GCACCUGuCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 129433 0.69 0.649248
Target:  5'- cGUCCggCC-CCAaGUGGGCGG-GGCGCa -3'
miRNA:   3'- -UAGGa-GGuGGUgCACCUGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 127997 0.68 0.719588
Target:  5'- --gCUCCGCguCGCGgucgcgGGGCGGCGGCGa -3'
miRNA:   3'- uagGAGGUG--GUGCa-----CCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 127820 0.68 0.7488
Target:  5'- gGUCCUugcgguUCACgUACGUGG-CGGCGuCGCg -3'
miRNA:   3'- -UAGGA------GGUG-GUGCACCuGUCGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 127791 0.66 0.838251
Target:  5'- cUCCcccgCCGCCGCGc--GCGGgGGCGCg -3'
miRNA:   3'- uAGGa---GGUGGUGCaccUGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 123660 0.69 0.699728
Target:  5'- cGUCUUCCACUGCGgGGACGuCGAgGUc -3'
miRNA:   3'- -UAGGAGGUGGUGCaCCUGUcGCUgCG- -5'
29486 3' -57.5 NC_006151.1 + 123173 0.7 0.588302
Target:  5'- -cCCUgCGCgugaACGUGuACGGCGACGCg -3'
miRNA:   3'- uaGGAgGUGg---UGCACcUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 123015 0.68 0.757397
Target:  5'- -gCCcCCGCCggcggacgccgugGCGUGGGCGgaccugccggccGCGGCGCu -3'
miRNA:   3'- uaGGaGGUGG-------------UGCACCUGU------------CGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 122906 0.66 0.821589
Target:  5'- -cCCUCgagCGCCuccuCGaGGGCGGCGACGa -3'
miRNA:   3'- uaGGAG---GUGGu---GCaCCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 119471 0.66 0.854172
Target:  5'- -gCCgUgCGCUACGUGGccgGCAGCcucGACGCc -3'
miRNA:   3'- uaGG-AgGUGGUGCACC---UGUCG---CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 119027 0.69 0.659404
Target:  5'- -cUCUCCGagGCGggcgccaaGGACGGCGGCGCc -3'
miRNA:   3'- uaGGAGGUggUGCa-------CCUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 118758 0.66 0.838251
Target:  5'- -gCCgugCCACgCGCGUGcGgaaccuggacGCGGUGGCGCg -3'
miRNA:   3'- uaGGa--GGUG-GUGCAC-C----------UGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 117574 0.68 0.758347
Target:  5'- --gCUCC-CCGCGgaggaUGGGCcGCGugGCg -3'
miRNA:   3'- uagGAGGuGGUGC-----ACCUGuCGCugCG- -5'
29486 3' -57.5 NC_006151.1 + 116970 0.69 0.679643
Target:  5'- -aCCUCCACguCGcUGGAC-GUGAgGCg -3'
miRNA:   3'- uaGGAGGUGguGC-ACCUGuCGCUgCG- -5'
29486 3' -57.5 NC_006151.1 + 113095 0.66 0.821589
Target:  5'- -gCCgCCGCCACcggGGGCGGgGcCGCg -3'
miRNA:   3'- uaGGaGGUGGUGca-CCUGUCgCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 109926 0.66 0.830009
Target:  5'- -aCCUCCGCCGcCGgccucuccccUGGGCGGCcucGGcCGCg -3'
miRNA:   3'- uaGGAGGUGGU-GC----------ACCUGUCG---CU-GCG- -5'
29486 3' -57.5 NC_006151.1 + 109897 0.74 0.39132
Target:  5'- cAUCCUCCGCCGCG-GcGGCAGCa--GCa -3'
miRNA:   3'- -UAGGAGGUGGUGCaC-CUGUCGcugCG- -5'
29486 3' -57.5 NC_006151.1 + 108284 0.68 0.729412
Target:  5'- -cCCUCCACCAcCGUcugccccGGCGGCGACc- -3'
miRNA:   3'- uaGGAGGUGGU-GCAc------CUGUCGCUGcg -5'
29486 3' -57.5 NC_006151.1 + 108092 0.66 0.854172
Target:  5'- -aCCaUCCGCCGCGaccGCGGCcGCGCa -3'
miRNA:   3'- uaGG-AGGUGGUGCaccUGUCGcUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.