miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 3' -59.3 NC_006151.1 + 72869 0.66 0.736639
Target:  5'- cGAGGCgGCGG-CGC--CCGUGUcgGCGa -3'
miRNA:   3'- -CUCCG-CGUCuGCGacGGCACGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 69140 0.66 0.736639
Target:  5'- aGGGcGCGCGGGUGCUcgacGCCGUGCcgcucGCAc -3'
miRNA:   3'- -CUC-CGCGUCUGCGA----CGGCACGua---CGU- -5'
29487 3' -59.3 NC_006151.1 + 135085 0.66 0.736639
Target:  5'- cGGGCGgGGGCgGCgggGCCGgGCggGCGg -3'
miRNA:   3'- cUCCGCgUCUG-CGa--CGGCaCGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 72034 0.66 0.736639
Target:  5'- --cGCGCGGGCGCcccGCCGcGCA-GCGu -3'
miRNA:   3'- cucCGCGUCUGCGa--CGGCaCGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 95133 0.66 0.736639
Target:  5'- uGAGGCGCc-GCGCcGCCGgGUcgGCc -3'
miRNA:   3'- -CUCCGCGucUGCGaCGGCaCGuaCGu -5'
29487 3' -59.3 NC_006151.1 + 97795 0.66 0.736639
Target:  5'- cGAaGCGCucAGGCGCgcgGCCGUGCGccggucGCGg -3'
miRNA:   3'- -CUcCGCG--UCUGCGa--CGGCACGUa-----CGU- -5'
29487 3' -59.3 NC_006151.1 + 118156 0.66 0.736639
Target:  5'- -cGGCGguGGCGCcGCUgGUGCGcgGCc -3'
miRNA:   3'- cuCCGCguCUGCGaCGG-CACGUa-CGu -5'
29487 3' -59.3 NC_006151.1 + 122211 0.66 0.727812
Target:  5'- -cGGCGCAGccguGCGCggugugcuucgaggaGCUGUGCGUGaCGg -3'
miRNA:   3'- cuCCGCGUC----UGCGa--------------CGGCACGUAC-GU- -5'
29487 3' -59.3 NC_006151.1 + 2679 0.66 0.726827
Target:  5'- aGAGGCGCAG-CgGCUcgGCCccgggGUGCAgGCGg -3'
miRNA:   3'- -CUCCGCGUCuG-CGA--CGG-----CACGUaCGU- -5'
29487 3' -59.3 NC_006151.1 + 21675 0.66 0.726827
Target:  5'- -cGGUGCGGGgGCUGCUG-GUAgaacgGCGu -3'
miRNA:   3'- cuCCGCGUCUgCGACGGCaCGUa----CGU- -5'
29487 3' -59.3 NC_006151.1 + 43381 0.66 0.726827
Target:  5'- cGGGgGCGGugGUgGCCGUcgcucgugGCcgGCAa -3'
miRNA:   3'- cUCCgCGUCugCGaCGGCA--------CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 46361 0.66 0.726827
Target:  5'- -cGGCGCAGugGaUGCgGcGgAUGCAg -3'
miRNA:   3'- cuCCGCGUCugCgACGgCaCgUACGU- -5'
29487 3' -59.3 NC_006151.1 + 85485 0.66 0.726827
Target:  5'- -cGGCGaGGACGC-GCCGcUGC-UGCGc -3'
miRNA:   3'- cuCCGCgUCUGCGaCGGC-ACGuACGU- -5'
29487 3' -59.3 NC_006151.1 + 27440 0.66 0.716935
Target:  5'- uGGGCGCggcGGACGCgguggGUCGgggGCggGCGg -3'
miRNA:   3'- cUCCGCG---UCUGCGa----CGGCa--CGuaCGU- -5'
29487 3' -59.3 NC_006151.1 + 75317 0.66 0.716935
Target:  5'- aGGGGUgGCAGAgGgUGCCcaugGCGUGCu -3'
miRNA:   3'- -CUCCG-CGUCUgCgACGGca--CGUACGu -5'
29487 3' -59.3 NC_006151.1 + 97975 0.66 0.716935
Target:  5'- cAGGuCGCGGugGUucuUGCCGggcgGCGUGg- -3'
miRNA:   3'- cUCC-GCGUCugCG---ACGGCa---CGUACgu -5'
29487 3' -59.3 NC_006151.1 + 123035 0.66 0.716935
Target:  5'- -uGGCGUGGGCGgacCUGCCGgccgcgGCGcUGCGc -3'
miRNA:   3'- cuCCGCGUCUGC---GACGGCa-----CGU-ACGU- -5'
29487 3' -59.3 NC_006151.1 + 53083 0.66 0.716935
Target:  5'- cGAGGCGCAGGUGCUcGuCCGUcaGCGggagGCc -3'
miRNA:   3'- -CUCCGCGUCUGCGA-C-GGCA--CGUa---CGu -5'
29487 3' -59.3 NC_006151.1 + 90626 0.66 0.716935
Target:  5'- cGAGGCggcccGCGGGCGCuUGgCGauggGCGUGUAc -3'
miRNA:   3'- -CUCCG-----CGUCUGCG-ACgGCa---CGUACGU- -5'
29487 3' -59.3 NC_006151.1 + 96732 0.66 0.716935
Target:  5'- gGAGGCgGCGGGCGCgacgacggagGCCauggcgGCGUGUg -3'
miRNA:   3'- -CUCCG-CGUCUGCGa---------CGGca----CGUACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.