miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29487 5' -57.5 NC_006151.1 + 98963 0.66 0.848813
Target:  5'- -gUGGACgagGC----GGCGCUGGugCCc -3'
miRNA:   3'- agACCUGa--CGuaggUCGCGACCugGG- -5'
29487 5' -57.5 NC_006151.1 + 118315 0.66 0.84802
Target:  5'- --gGGACUGCGUgCCcccgagcAGCGCcGcGCCCg -3'
miRNA:   3'- agaCCUGACGUA-GG-------UCGCGaCcUGGG- -5'
29487 5' -57.5 NC_006151.1 + 27333 0.66 0.846428
Target:  5'- --gGGGCUGCuccccgggaccgggGUCguGgGCcgGGGCCCg -3'
miRNA:   3'- agaCCUGACG--------------UAGguCgCGa-CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 17710 0.66 0.840794
Target:  5'- gCUGcuGugUGCGcCCGgguGCGCcgGGGCCCa -3'
miRNA:   3'- aGAC--CugACGUaGGU---CGCGa-CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 3819 0.66 0.840794
Target:  5'- gCUGGACuuggUGCuggCGGgGCUGGaggGCCCg -3'
miRNA:   3'- aGACCUG----ACGuagGUCgCGACC---UGGG- -5'
29487 5' -57.5 NC_006151.1 + 134739 0.66 0.840794
Target:  5'- --gGGACUuuGUCgccccgagCAGCGCgcgcgGGGCCCg -3'
miRNA:   3'- agaCCUGAcgUAG--------GUCGCGa----CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 6089 0.66 0.840794
Target:  5'- --gGGGCUGC-UgCuGCuGCUGGGCCg -3'
miRNA:   3'- agaCCUGACGuAgGuCG-CGACCUGGg -5'
29487 5' -57.5 NC_006151.1 + 34001 0.66 0.840794
Target:  5'- --cGGAgggGCGUcCCGGCGCgccGGCCCg -3'
miRNA:   3'- agaCCUga-CGUA-GGUCGCGac-CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 73698 0.66 0.840794
Target:  5'- --cGGcuCUGCG-CCGcGUGCUGGGCCa -3'
miRNA:   3'- agaCCu-GACGUaGGU-CGCGACCUGGg -5'
29487 5' -57.5 NC_006151.1 + 63695 0.66 0.824197
Target:  5'- aCUGGGCgUGCGcguUCgCGGCGacgUGGcGCCCg -3'
miRNA:   3'- aGACCUG-ACGU---AG-GUCGCg--ACC-UGGG- -5'
29487 5' -57.5 NC_006151.1 + 136334 0.66 0.824197
Target:  5'- -gUGGACccCAaccCCAGCGgcCUGGACCCc -3'
miRNA:   3'- agACCUGacGUa--GGUCGC--GACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 57157 0.66 0.824197
Target:  5'- --gGGGCgaggGCGUCCcccGGCGC-GG-CCCa -3'
miRNA:   3'- agaCCUGa---CGUAGG---UCGCGaCCuGGG- -5'
29487 5' -57.5 NC_006151.1 + 86322 0.66 0.824197
Target:  5'- --gGGGCcgUGCucgCCcGCGCcgUGGGCCCg -3'
miRNA:   3'- agaCCUG--ACGua-GGuCGCG--ACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 104904 0.66 0.822498
Target:  5'- -gUGGACgcgGCGg-CGGCGCgcgaccgcgacgGGGCCCu -3'
miRNA:   3'- agACCUGa--CGUagGUCGCGa-----------CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 50465 0.66 0.81908
Target:  5'- --cGGGCgcucGCG-CCAGCGCggcgcgaccgagccGGACCCc -3'
miRNA:   3'- agaCCUGa---CGUaGGUCGCGa-------------CCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 101197 0.66 0.815634
Target:  5'- -gUGGAC-GCGUgCCuGCGCgaGGGCCa -3'
miRNA:   3'- agACCUGaCGUA-GGuCGCGa-CCUGGg -5'
29487 5' -57.5 NC_006151.1 + 11059 0.66 0.813902
Target:  5'- cCUGGACgcgggccacacugUGCGgcggaCCgugccaaguuuagGGCGCUGcGACCCa -3'
miRNA:   3'- aGACCUG-------------ACGUa----GG-------------UCGCGAC-CUGGG- -5'
29487 5' -57.5 NC_006151.1 + 136998 0.66 0.806906
Target:  5'- --cGGGCgcgcGCG-CaCGGCGCUGGGCgCCc -3'
miRNA:   3'- agaCCUGa---CGUaG-GUCGCGACCUG-GG- -5'
29487 5' -57.5 NC_006151.1 + 100463 0.66 0.806906
Target:  5'- --aGGcGCUGCGcgagugcgaGGCGCUGGGCCUg -3'
miRNA:   3'- agaCC-UGACGUagg------UCGCGACCUGGG- -5'
29487 5' -57.5 NC_006151.1 + 61867 0.66 0.806906
Target:  5'- gCUcGGC-GCGUCU-GCGcCUGGACCCu -3'
miRNA:   3'- aGAcCUGaCGUAGGuCGC-GACCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.