miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 82387 0.66 0.685908
Target:  5'- gUCgaagGCCACga--GCUCCGCGCCCGa -3'
miRNA:   3'- gAGag--UGGUGgcaaCGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 7639 0.66 0.685908
Target:  5'- gUCgCcCCACCcgcGCCUCGCGCUCGg -3'
miRNA:   3'- gAGaGuGGUGGcaaCGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 24406 0.66 0.685908
Target:  5'- gUCUCGaagagCACCac--CCCCGCGCCCc -3'
miRNA:   3'- gAGAGUg----GUGGcaacGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 63802 0.66 0.685908
Target:  5'- gUCgccagCGCCucGCCGg-GCCCCgggGCGCCCu -3'
miRNA:   3'- gAGa----GUGG--UGGCaaCGGGG---CGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 37220 0.66 0.685908
Target:  5'- cCUC-CGCCGCgGccuccccgGCCCCGgccccggagccCGCCCGg -3'
miRNA:   3'- -GAGaGUGGUGgCaa------CGGGGC-----------GCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 37478 0.66 0.685908
Target:  5'- ---gCGCCGCgGccgGgCCCGUGCCCGu -3'
miRNA:   3'- gagaGUGGUGgCaa-CgGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 71613 0.66 0.685908
Target:  5'- cCUC-CACCACCGcgGCCUUcuCGCCgGg -3'
miRNA:   3'- -GAGaGUGGUGGCaaCGGGGc-GCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 59442 0.66 0.685908
Target:  5'- gUCggcCGCCGCCGccGCgaCCGCGgCCGa -3'
miRNA:   3'- gAGa--GUGGUGGCaaCGg-GGCGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 34228 0.66 0.684934
Target:  5'- cCUCUCuCCcgacgagGCCGagccgGUCUCGCGCCCc -3'
miRNA:   3'- -GAGAGuGG-------UGGCaa---CGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 52395 0.66 0.676149
Target:  5'- ----gGCgGCgGgcGCCgCCGCGCCCGa -3'
miRNA:   3'- gagagUGgUGgCaaCGG-GGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 136027 0.66 0.676149
Target:  5'- -cCUgACCAUgGUccucgagcaggUGCgCCCGCGCaCCGg -3'
miRNA:   3'- gaGAgUGGUGgCA-----------ACG-GGGCGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 20360 0.66 0.676149
Target:  5'- uUCagCACCAUCG-UGCCguUCGCGUCCa -3'
miRNA:   3'- gAGa-GUGGUGGCaACGG--GGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 83259 0.66 0.676149
Target:  5'- gUCgCGCCAgCGgcGCCCCGaGCUCa -3'
miRNA:   3'- gAGaGUGGUgGCaaCGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 9165 0.66 0.676149
Target:  5'- cCUCUCcccccuCCACCGcccGCCCU-CGCCCc -3'
miRNA:   3'- -GAGAGu-----GGUGGCaa-CGGGGcGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 104382 0.66 0.675171
Target:  5'- gCUCUCGCggcuggcccgcauCGCCGgcggcgUGCuggCCCGCGCCg- -3'
miRNA:   3'- -GAGAGUG-------------GUGGCa-----ACG---GGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 110147 0.66 0.666357
Target:  5'- ---gCGCCACCGgacucgggGCCCUG-GCCCu -3'
miRNA:   3'- gagaGUGGUGGCaa------CGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 50666 0.66 0.666357
Target:  5'- gUCgugCGCgGCCGcacCCCCGCGCCg- -3'
miRNA:   3'- gAGa--GUGgUGGCaacGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 47889 0.66 0.666357
Target:  5'- -aCUCcCC-CCGggacGCUCCGCGCCuCGa -3'
miRNA:   3'- gaGAGuGGuGGCaa--CGGGGCGCGG-GC- -5'
29488 3' -61.6 NC_006151.1 + 8926 0.66 0.666357
Target:  5'- cCUCUCcCCGCCcccGCCCCcUGuCCCGg -3'
miRNA:   3'- -GAGAGuGGUGGcaaCGGGGcGC-GGGC- -5'
29488 3' -61.6 NC_006151.1 + 135614 0.66 0.666357
Target:  5'- cCUCcCACgGCCGcgGCgCCCGCaccaCCCGg -3'
miRNA:   3'- -GAGaGUGgUGGCaaCG-GGGCGc---GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.