miRNA display CGI


Results 21 - 40 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29488 3' -61.6 NC_006151.1 + 117904 0.67 0.577944
Target:  5'- cCUCUCucuucaccccGCCGCCGga--CCCGUccGCCCGg -3'
miRNA:   3'- -GAGAG----------UGGUGGCaacgGGGCG--CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 114664 0.67 0.576969
Target:  5'- -cCUCGCCcgugagcGCCGcgaagGCCUCGUGCUCGa -3'
miRNA:   3'- gaGAGUGG-------UGGCaa---CGGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 112436 0.68 0.568214
Target:  5'- ---gCGCCGCCGccGCCgCGCGCCa- -3'
miRNA:   3'- gagaGUGGUGGCaaCGGgGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 111387 0.66 0.646703
Target:  5'- gUCgUCGCCGCCGccgGCaCCCcCGCCgGg -3'
miRNA:   3'- gAG-AGUGGUGGCaa-CG-GGGcGCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 110175 0.67 0.61716
Target:  5'- -gCUCAUCGCCGcgUGCCgCCugauaGCGCgCCGc -3'
miRNA:   3'- gaGAGUGGUGGCa-ACGG-GG-----CGCG-GGC- -5'
29488 3' -61.6 NC_006151.1 + 110147 0.66 0.666357
Target:  5'- ---gCGCCACCGgacucgggGCCCUG-GCCCu -3'
miRNA:   3'- gagaGUGGUGGCaa------CGGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 109806 0.73 0.299883
Target:  5'- gUUUgCGCCGCCG--GCCCCGCGCUCc -3'
miRNA:   3'- gAGA-GUGGUGGCaaCGGGGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 109449 0.67 0.61716
Target:  5'- -cUUCGCgGCCG--GCCCCGaCGCCgGa -3'
miRNA:   3'- gaGAGUGgUGGCaaCGGGGC-GCGGgC- -5'
29488 3' -61.6 NC_006151.1 + 109374 0.67 0.626021
Target:  5'- cCUCUuccgcccccgccgCACCACCGccgGCCCCaccaccuucGCGgCCGg -3'
miRNA:   3'- -GAGA-------------GUGGUGGCaa-CGGGG---------CGCgGGC- -5'
29488 3' -61.6 NC_006151.1 + 109117 0.68 0.520298
Target:  5'- ----aGCCGCCGg---CCCGCGCCCGc -3'
miRNA:   3'- gagagUGGUGGCaacgGGGCGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 108893 0.67 0.616175
Target:  5'- gCUCUUguuCCGcgaaggcCCGUaucgGCCCCGCGCCa- -3'
miRNA:   3'- -GAGAGu--GGU-------GGCAa---CGGGGCGCGGgc -5'
29488 3' -61.6 NC_006151.1 + 108285 0.76 0.179035
Target:  5'- cCUC-CACCACCGUcUGCCCCGgcggcgacccccaCGCCCc -3'
miRNA:   3'- -GAGaGUGGUGGCA-ACGGGGC-------------GCGGGc -5'
29488 3' -61.6 NC_006151.1 + 108048 0.66 0.656539
Target:  5'- -aCUCAgCCGCCGa---CCCGgGCCCa -3'
miRNA:   3'- gaGAGU-GGUGGCaacgGGGCgCGGGc -5'
29488 3' -61.6 NC_006151.1 + 108007 0.71 0.357039
Target:  5'- ---cCACCGCCGccGCCaccaCCGCGCCCa -3'
miRNA:   3'- gagaGUGGUGGCaaCGG----GGCGCGGGc -5'
29488 3' -61.6 NC_006151.1 + 107838 0.67 0.607324
Target:  5'- ---cCGCCcuacCCGgcgacgGCCCCgGCGCCCGa -3'
miRNA:   3'- gagaGUGGu---GGCaa----CGGGG-CGCGGGC- -5'
29488 3' -61.6 NC_006151.1 + 107705 0.66 0.646703
Target:  5'- ---cCGCCGCCGgcaccaagGCCgCCGCgGCCCc -3'
miRNA:   3'- gagaGUGGUGGCaa------CGG-GGCG-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 107587 0.71 0.39646
Target:  5'- aCUCcCGCCGCCaagcugGCCCCGCcggcgccgccGCCCGc -3'
miRNA:   3'- -GAGaGUGGUGGcaa---CGGGGCG----------CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 107526 0.72 0.334741
Target:  5'- -gCUC-CCGCCGUUgGCCCCGgCgGCCCc -3'
miRNA:   3'- gaGAGuGGUGGCAA-CGGGGC-G-CGGGc -5'
29488 3' -61.6 NC_006151.1 + 107106 0.67 0.577944
Target:  5'- gCUCUgggCGCCGCCcgaGCCgCCGCgacGCCCGg -3'
miRNA:   3'- -GAGA---GUGGUGGcaaCGG-GGCG---CGGGC- -5'
29488 3' -61.6 NC_006151.1 + 106579 0.7 0.429948
Target:  5'- gCUCUCGgCGCUGUgguccGCCCUGCaGCCgGa -3'
miRNA:   3'- -GAGAGUgGUGGCAa----CGGGGCG-CGGgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.