miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 112325 0.66 0.677406
Target:  5'- -aCGUCCUCGaacCAgacgcGCaCCCgCGGGGGCa -3'
miRNA:   3'- ggGUAGGGGUa--GU-----UG-GGGgGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 38859 0.66 0.677406
Target:  5'- aCCCAcaCgCCG-CGGCCCUCCGaGGcGGCc -3'
miRNA:   3'- -GGGUa-GgGGUaGUUGGGGGGC-CC-CCG- -5'
29490 3' -62.2 NC_006151.1 + 47416 0.66 0.677406
Target:  5'- gCCCggCCaCCAUCugaguGCCCaaCCGGGgcccGGCg -3'
miRNA:   3'- -GGGuaGG-GGUAGu----UGGGg-GGCCC----CCG- -5'
29490 3' -62.2 NC_006151.1 + 124021 0.66 0.66773
Target:  5'- cCCCggCCCC-UCGGaggCCCCCGacGGCg -3'
miRNA:   3'- -GGGuaGGGGuAGUUg--GGGGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 20421 0.66 0.66773
Target:  5'- cCCCcUCCUCGUCcuCCUCCUcuucgucggaGcGGGGCu -3'
miRNA:   3'- -GGGuAGGGGUAGuuGGGGGG----------C-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 64523 0.66 0.66773
Target:  5'- gCCAaaggCCgCcgCGGCCgCgUCGGGGGCg -3'
miRNA:   3'- gGGUa---GGgGuaGUUGG-GgGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 10271 0.66 0.66773
Target:  5'- gUCC-UCCUCGcCGGCUCCCaggCGGcGGGCa -3'
miRNA:   3'- -GGGuAGGGGUaGUUGGGGG---GCC-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 107324 0.66 0.666761
Target:  5'- aCCCGUUCCCAUaCGccgugucggcgacGCCCaCCCGGcccGCg -3'
miRNA:   3'- -GGGUAGGGGUA-GU-------------UGGG-GGGCCcc-CG- -5'
29490 3' -62.2 NC_006151.1 + 48650 0.66 0.658027
Target:  5'- gCCG-CUgCAgcagCAGCCCCCgCcGGGGCa -3'
miRNA:   3'- gGGUaGGgGUa---GUUGGGGG-GcCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 13746 0.66 0.658027
Target:  5'- gCCCGUCCCgCGggcCGgaccGCCCCCuuccCGGGacuuGGCa -3'
miRNA:   3'- -GGGUAGGG-GUa--GU----UGGGGG----GCCC----CCG- -5'
29490 3' -62.2 NC_006151.1 + 36310 0.66 0.658027
Target:  5'- cCUCGUCCUCG--GGCCCcgguCCCGGGccGGCu -3'
miRNA:   3'- -GGGUAGGGGUagUUGGG----GGGCCC--CCG- -5'
29490 3' -62.2 NC_006151.1 + 141447 0.66 0.657056
Target:  5'- -aCGUCCCCGUaggagggCggUCUggagCCGGGGGCg -3'
miRNA:   3'- ggGUAGGGGUA-------GuuGGGg---GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 41427 0.66 0.652196
Target:  5'- uUCCGUCCCCAcuccCAGCCUCCCccgcugccaccgauuGGccGGCg -3'
miRNA:   3'- -GGGUAGGGGUa---GUUGGGGGG---------------CCc-CCG- -5'
29490 3' -62.2 NC_006151.1 + 32740 0.66 0.649279
Target:  5'- cCCCGUCCCCucuUCcuuCCCcacacgccccgcucuCCCacgccgcggccgcgGGGGGCc -3'
miRNA:   3'- -GGGUAGGGGu--AGuu-GGG---------------GGG--------------CCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 83082 0.66 0.648306
Target:  5'- gUCCAUCgCCCAcgCGugCaCCUCGaGcGGGCg -3'
miRNA:   3'- -GGGUAG-GGGUa-GUugG-GGGGC-C-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 83413 0.66 0.648306
Target:  5'- gCCA-CCaCCAgguuGCCgCCgGGGGGCu -3'
miRNA:   3'- gGGUaGG-GGUagu-UGGgGGgCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 10305 0.66 0.648306
Target:  5'- cCCgCGUCCCCggcGUCAucacgcgggACCCCCCGGu--- -3'
miRNA:   3'- -GG-GUAGGGG---UAGU---------UGGGGGGCCcccg -5'
29490 3' -62.2 NC_006151.1 + 50358 0.66 0.648306
Target:  5'- uCCCG-CCgCGUCu-CCgCCggCGGGGGCg -3'
miRNA:   3'- -GGGUaGGgGUAGuuGGgGG--GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 53520 0.66 0.648306
Target:  5'- gCCGcgcgCCCCGUgAGCCgCUCCaGGGcGCg -3'
miRNA:   3'- gGGUa---GGGGUAgUUGG-GGGGcCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 123965 0.66 0.648306
Target:  5'- gCCAcCCCCAaCGACgUCUCCGcGGaGGCg -3'
miRNA:   3'- gGGUaGGGGUaGUUG-GGGGGC-CC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.