miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 107369 0.75 0.226585
Target:  5'- cCCCgAUCCCCGggcuGCCCCCCgaguuggcGGGGGa -3'
miRNA:   3'- -GGG-UAGGGGUagu-UGGGGGG--------CCCCCg -5'
29490 3' -62.2 NC_006151.1 + 59081 0.74 0.236767
Target:  5'- aCCUcUCCCCcgCAAaguCCCCCCGGcguuccaucagcaGGGCg -3'
miRNA:   3'- -GGGuAGGGGuaGUU---GGGGGGCC-------------CCCG- -5'
29490 3' -62.2 NC_006151.1 + 140190 0.74 0.242835
Target:  5'- gCUgGaCCCCAUCGugGCCaCCgCGGGGGCg -3'
miRNA:   3'- -GGgUaGGGGUAGU--UGG-GGgGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 130906 0.74 0.248464
Target:  5'- gCCGUCgCCGUCGucggugGCCgggCCCgCGGGGGCg -3'
miRNA:   3'- gGGUAGgGGUAGU------UGG---GGG-GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 3672 0.74 0.2542
Target:  5'- gCCGUCCCCGgggCGGCgggCCCCGGGcGCg -3'
miRNA:   3'- gGGUAGGGGUa--GUUGg--GGGGCCCcCG- -5'
29490 3' -62.2 NC_006151.1 + 42237 0.74 0.2542
Target:  5'- cCCCGcCCCCuuuuuUCGcGgCCCCCGGGGaGCg -3'
miRNA:   3'- -GGGUaGGGGu----AGU-UgGGGGGCCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 11562 0.74 0.259456
Target:  5'- aCCCggCCCCGaCAcccccccGCCCgCCGGGGGa -3'
miRNA:   3'- -GGGuaGGGGUaGU-------UGGGgGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 10856 0.74 0.260045
Target:  5'- cCCCuUCCCCucgcccCGGCCCCCCGGcuuGGUg -3'
miRNA:   3'- -GGGuAGGGGua----GUUGGGGGGCCc--CCG- -5'
29490 3' -62.2 NC_006151.1 + 138587 0.73 0.263604
Target:  5'- cCCCA-CCCCGUCGuguacgcggcgcuGCCgcucggcgaggacgCCgCCGGGGGCg -3'
miRNA:   3'- -GGGUaGGGGUAGU-------------UGG--------------GG-GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 36155 0.73 0.274518
Target:  5'- cCCCGUCCuCCuUCGGCCcagcagcagcagcagCCCCGccGGGGCu -3'
miRNA:   3'- -GGGUAGG-GGuAGUUGG---------------GGGGC--CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 109528 0.73 0.284521
Target:  5'- gCCGUCUCag-CAgcGCCCCCCGGaGGCg -3'
miRNA:   3'- gGGUAGGGguaGU--UGGGGGGCCcCCG- -5'
29490 3' -62.2 NC_006151.1 + 93023 0.73 0.29677
Target:  5'- cCCCAccuucucUCUCCGUCGucgccucCCCCCCGcGGGCc -3'
miRNA:   3'- -GGGU-------AGGGGUAGUu------GGGGGGCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 40380 0.72 0.30338
Target:  5'- cCCCGUCCCCGUCcuCCUCCuccucugcguccgCGGcGGCg -3'
miRNA:   3'- -GGGUAGGGGUAGuuGGGGG-------------GCCcCCG- -5'
29490 3' -62.2 NC_006151.1 + 51565 0.72 0.304048
Target:  5'- uCCCuuggUCCC-UCGGCCCCCCucGGGCg -3'
miRNA:   3'- -GGGua--GGGGuAGUUGGGGGGccCCCG- -5'
29490 3' -62.2 NC_006151.1 + 127787 0.72 0.304048
Target:  5'- cCCCcUCCCCcgCcGCCgCgCgCGGGGGCg -3'
miRNA:   3'- -GGGuAGGGGuaGuUGGgG-G-GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 28853 0.72 0.310103
Target:  5'- gCCCGgcucCCCCAUUGGCCggcgcguCCCCGGaGGCg -3'
miRNA:   3'- -GGGUa---GGGGUAGUUGG-------GGGGCCcCCG- -5'
29490 3' -62.2 NC_006151.1 + 139062 0.72 0.310781
Target:  5'- gCUCAUCCUCcUCGAgcucgggcuCCgCCUGGGGGCg -3'
miRNA:   3'- -GGGUAGGGGuAGUU---------GGgGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 15225 0.72 0.317628
Target:  5'- gCCAgcgCCCC-UCGGCCCCCUGcuGGCa -3'
miRNA:   3'- gGGUa--GGGGuAGUUGGGGGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 77208 0.72 0.322488
Target:  5'- cUCCAUCCCCgcgccgccgcguguGUgCGccgggaggcGCCCCCCGGcGGGUu -3'
miRNA:   3'- -GGGUAGGGG--------------UA-GU---------UGGGGGGCC-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 9415 0.72 0.324588
Target:  5'- cCCCAUCCCCGcCGGCCCCCCu----- -3'
miRNA:   3'- -GGGUAGGGGUaGUUGGGGGGcccccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.