miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29491 3' -58.2 NC_006151.1 + 109124 0.66 0.80844
Target:  5'- --gGCCCgcGCCCGCcgGCCGGGCAc--- -3'
miRNA:   3'- ccaUGGG--UGGGCGa-CGGUUCGUcguc -5'
29491 3' -58.2 NC_006151.1 + 9482 0.66 0.80844
Target:  5'- --gGCCC-CCCGCgGCC--GCGGCGu -3'
miRNA:   3'- ccaUGGGuGGGCGaCGGuuCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 85133 0.66 0.80844
Target:  5'- uGUGCCugCACCUGgUGCaccgcguGCGGCAGg -3'
miRNA:   3'- cCAUGG--GUGGGCgACGguu----CGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 120399 0.66 0.80844
Target:  5'- cGUGCUCaacgGCCCGCUggGCUuccugcugAAGCAGCAc -3'
miRNA:   3'- cCAUGGG----UGGGCGA--CGG--------UUCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 20295 0.66 0.80844
Target:  5'- cGGgGCCCcgggcGCCCGCcgugGCguuGGCGGCGGc -3'
miRNA:   3'- -CCaUGGG-----UGGGCGa---CGgu-UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 107657 0.66 0.80844
Target:  5'- --aGCCgCAgCCGCaGCC--GCAGCAGg -3'
miRNA:   3'- ccaUGG-GUgGGCGaCGGuuCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 141595 0.66 0.799587
Target:  5'- cGGgcgagAgCCGCCCggcgagGCUGCCGGGaucgGGCGGg -3'
miRNA:   3'- -CCa----UgGGUGGG------CGACGGUUCg---UCGUC- -5'
29491 3' -58.2 NC_006151.1 + 7637 0.66 0.799587
Target:  5'- cGGUcgcCCCACCCGC-GCCucGCgcucGGCGc -3'
miRNA:   3'- -CCAu--GGGUGGGCGaCGGuuCG----UCGUc -5'
29491 3' -58.2 NC_006151.1 + 135703 0.66 0.799587
Target:  5'- cGUACUCGCUgaUGCUGCUcacGGGCAGgAGc -3'
miRNA:   3'- cCAUGGGUGG--GCGACGG---UUCGUCgUC- -5'
29491 3' -58.2 NC_006151.1 + 18766 0.66 0.799587
Target:  5'- gGGUGCCCgggGCCCGg-GCCGGGgccguCAGCu- -3'
miRNA:   3'- -CCAUGGG---UGGGCgaCGGUUC-----GUCGuc -5'
29491 3' -58.2 NC_006151.1 + 38323 0.66 0.798694
Target:  5'- cGGaGCCCGcgcccggccugccCCCGCUcugGcCCGAGCAGCc- -3'
miRNA:   3'- -CCaUGGGU-------------GGGCGA---C-GGUUCGUCGuc -5'
29491 3' -58.2 NC_006151.1 + 95965 0.66 0.790584
Target:  5'- --aGCCCgACgCCGCcGCgGcGCAGCAGg -3'
miRNA:   3'- ccaUGGG-UG-GGCGaCGgUuCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 32570 0.66 0.790584
Target:  5'- cGGg---CACCCGCgGCCGGGCGGaGGg -3'
miRNA:   3'- -CCauggGUGGGCGaCGGUUCGUCgUC- -5'
29491 3' -58.2 NC_006151.1 + 73204 0.66 0.790584
Target:  5'- ----gCUGCCCGCggGCCAGGCccGCGGg -3'
miRNA:   3'- ccaugGGUGGGCGa-CGGUUCGu-CGUC- -5'
29491 3' -58.2 NC_006151.1 + 77836 0.66 0.790584
Target:  5'- -cUGCCCAgCCGCUGC--AGguGCuGa -3'
miRNA:   3'- ccAUGGGUgGGCGACGguUCguCGuC- -5'
29491 3' -58.2 NC_006151.1 + 104703 0.66 0.790584
Target:  5'- cGUGCCgagCACCgaGCUGCUgcGCGGCGc -3'
miRNA:   3'- cCAUGG---GUGGg-CGACGGuuCGUCGUc -5'
29491 3' -58.2 NC_006151.1 + 108665 0.66 0.790584
Target:  5'- aGGU-CCC-CCCucaGCaGCCGgAGCGGCGGc -3'
miRNA:   3'- -CCAuGGGuGGG---CGaCGGU-UCGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 39627 0.66 0.78144
Target:  5'- cGGUGagCACCCGC-GCCGGGCccCGGa -3'
miRNA:   3'- -CCAUggGUGGGCGaCGGUUCGucGUC- -5'
29491 3' -58.2 NC_006151.1 + 137720 0.66 0.78144
Target:  5'- --cGCCCugCCGUcGCCGuacGCGGUGGc -3'
miRNA:   3'- ccaUGGGugGGCGaCGGUu--CGUCGUC- -5'
29491 3' -58.2 NC_006151.1 + 107510 0.66 0.78144
Target:  5'- cGGUcgACCCGCCCacGCUcccGCCGuuGGCcccGGCGGc -3'
miRNA:   3'- -CCA--UGGGUGGG--CGA---CGGU--UCG---UCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.