miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 36690 0.66 0.846766
Target:  5'- aCCAgcaCCGCgagccccugcucgaCGagCCCGCCGCCGCGa -3'
miRNA:   3'- aGGUa--GGUGa-------------GUagGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 106055 0.66 0.843566
Target:  5'- gCCAccUUCGCgcgcuUCGUgCgCCACCGCCGCGc -3'
miRNA:   3'- aGGU--AGGUG-----AGUAgG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 25436 0.66 0.843566
Target:  5'- cCCGUCa--UCccUCCCCGCgGCCGCc -3'
miRNA:   3'- aGGUAGgugAGu-AGGGGUGgUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 99740 0.66 0.843566
Target:  5'- cUCGUCgAC-C-UCgCCGCCGCCGCGg -3'
miRNA:   3'- aGGUAGgUGaGuAGgGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 31781 0.66 0.843566
Target:  5'- gCCGggCgGCUCuccUCCuucaCCGCCGCCGCGu -3'
miRNA:   3'- aGGUa-GgUGAGu--AGG----GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 134675 0.66 0.843566
Target:  5'- aCgGUCCcCgu-UCCCCGCCAccCCGCGc -3'
miRNA:   3'- aGgUAGGuGaguAGGGGUGGU--GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 43993 0.66 0.843566
Target:  5'- cCCAcCCACcCAcCCCC-CC-CCGCAg -3'
miRNA:   3'- aGGUaGGUGaGUaGGGGuGGuGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 9160 0.66 0.843566
Target:  5'- aCCuUCCuCUCc-CCCCuCCACCGCc -3'
miRNA:   3'- aGGuAGGuGAGuaGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 93992 0.66 0.838709
Target:  5'- cUCCA-CCuugcggcggauggcCUCGUCCCgCAgCGCCGCGc -3'
miRNA:   3'- -AGGUaGGu-------------GAGUAGGG-GUgGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 72337 0.66 0.835433
Target:  5'- gCCAUggCCGCgagCA-CgUCGCCGCCGCAg -3'
miRNA:   3'- aGGUA--GGUGa--GUaGgGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 39976 0.66 0.835433
Target:  5'- gCCG-CCGCgggCG-CCCCGCCgGCCGUg -3'
miRNA:   3'- aGGUaGGUGa--GUaGGGGUGG-UGGCGu -5'
29492 3' -57.6 NC_006151.1 + 111380 0.66 0.835433
Target:  5'- cCUcgCCG-UCGUCgCCGCCGCCgGCAc -3'
miRNA:   3'- aGGuaGGUgAGUAGgGGUGGUGG-CGU- -5'
29492 3' -57.6 NC_006151.1 + 14617 0.66 0.827118
Target:  5'- aUCCAUCCAgcCAcCCCCACCcgucggggcgGCCGg- -3'
miRNA:   3'- -AGGUAGGUgaGUaGGGGUGG----------UGGCgu -5'
29492 3' -57.6 NC_006151.1 + 68416 0.66 0.827118
Target:  5'- gCCcgCCcccCUCG-CCCCGCUACaCGCGg -3'
miRNA:   3'- aGGuaGGu--GAGUaGGGGUGGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 83344 0.66 0.827118
Target:  5'- -gCGUCCACgugC-UCCCCGgCGCgCGCGc -3'
miRNA:   3'- agGUAGGUGa--GuAGGGGUgGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 51081 0.66 0.827118
Target:  5'- cUCC-UCCGCUCGcccgCCCCucuCCGCCu-- -3'
miRNA:   3'- -AGGuAGGUGAGUa---GGGGu--GGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 50666 0.66 0.827118
Target:  5'- gUCGUgCGCggccgCAcCCCCgcGCCGCCGCGg -3'
miRNA:   3'- aGGUAgGUGa----GUaGGGG--UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 137637 0.66 0.818626
Target:  5'- cUCCG-CC-CUCGUCCgCGCCcCCGUc -3'
miRNA:   3'- -AGGUaGGuGAGUAGGgGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 108560 0.66 0.818626
Target:  5'- cUCCGagcCCGCguccgCGUCCuCCuCCGCCGCc -3'
miRNA:   3'- -AGGUa--GGUGa----GUAGG-GGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 47070 0.66 0.818626
Target:  5'- uUCCcgGUCCuGCUCcggcUCCCgGCC-CCGCAc -3'
miRNA:   3'- -AGG--UAGG-UGAGu---AGGGgUGGuGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.