miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 109885 0.7 0.594578
Target:  5'- gUCCcucCCGCcCAUCCuCCGCCGCgGCGg -3'
miRNA:   3'- -AGGua-GGUGaGUAGG-GGUGGUGgCGU- -5'
29492 3' -57.6 NC_006151.1 + 109654 0.68 0.706071
Target:  5'- gCCG-CCGCUg--CCgCCACCGCCGCc -3'
miRNA:   3'- aGGUaGGUGAguaGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 109590 0.7 0.584454
Target:  5'- gCCcgCCcgcGCUCuucaCCCCGCCGCCGUc -3'
miRNA:   3'- aGGuaGG---UGAGua--GGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 109488 0.66 0.809092
Target:  5'- cCCcgCgGCUCAUguucacaccuccgCCgCUGCCGCCGCAg -3'
miRNA:   3'- aGGuaGgUGAGUA-------------GG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 109429 0.69 0.645461
Target:  5'- aCCA-CCGC-CggCCCCACCACCuucGCGg -3'
miRNA:   3'- aGGUaGGUGaGuaGGGGUGGUGG---CGU- -5'
29492 3' -57.6 NC_006151.1 + 109393 0.69 0.645461
Target:  5'- aCCA-CCGC-CggCCCCACCACCuucGCGg -3'
miRNA:   3'- aGGUaGGUGaGuaGGGGUGGUGG---CGU- -5'
29492 3' -57.6 NC_006151.1 + 109148 0.73 0.430941
Target:  5'- cUCCGUCUcCaCAU-CCCGCCGCCGCAg -3'
miRNA:   3'- -AGGUAGGuGaGUAgGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 108560 0.66 0.818626
Target:  5'- cUCCGagcCCGCguccgCGUCCuCCuCCGCCGCc -3'
miRNA:   3'- -AGGUa--GGUGa----GUAGG-GGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 108251 0.72 0.50232
Target:  5'- aCCGUCUGCUCAgacuacgcUCCCCaggcccgccccuccACCACCGUc -3'
miRNA:   3'- aGGUAGGUGAGU--------AGGGG--------------UGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 108197 0.8 0.169872
Target:  5'- aCCGUCUGCUCAgacuacgcUCCCCAggcCCGCCGCAc -3'
miRNA:   3'- aGGUAGGUGAGU--------AGGGGU---GGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 108085 0.75 0.363466
Target:  5'- cCCcUCCAC-CAUCCgCCGCgACCGCGg -3'
miRNA:   3'- aGGuAGGUGaGUAGG-GGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 108002 0.75 0.332584
Target:  5'- gCCcgCCACcgCcgCCgCCACCACCGCGc -3'
miRNA:   3'- aGGuaGGUGa-GuaGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 107926 0.67 0.801147
Target:  5'- cCCAaCC-C-CAgggucCCCCACCGCCGCc -3'
miRNA:   3'- aGGUaGGuGaGUa----GGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 107787 0.67 0.802036
Target:  5'- aUCCAgccaUCGCUCAaggcgcgcaucgagcCCCCGCCGCCGg- -3'
miRNA:   3'- -AGGUa---GGUGAGUa--------------GGGGUGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 107588 0.67 0.754951
Target:  5'- cUCCcgCCGC-CAagcuggCCCCGCCggcGCCGCc -3'
miRNA:   3'- -AGGuaGGUGaGUa-----GGGGUGG---UGGCGu -5'
29492 3' -57.6 NC_006151.1 + 106055 0.66 0.843566
Target:  5'- gCCAccUUCGCgcgcuUCGUgCgCCACCGCCGCGc -3'
miRNA:   3'- aGGU--AGGUG-----AGUAgG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 101871 0.68 0.725872
Target:  5'- -gCA-CCGCUC--CCgCCGCCGCCGCGg -3'
miRNA:   3'- agGUaGGUGAGuaGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 101814 0.73 0.439881
Target:  5'- cCCGUCCccGC-CGUCCCCgucucggcgGCCGCCGCc -3'
miRNA:   3'- aGGUAGG--UGaGUAGGGG---------UGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 99929 0.67 0.773814
Target:  5'- -aCGgcgCCGgcCUCAUCCCCaacgucagcgGCUACCGCAc -3'
miRNA:   3'- agGUa--GGU--GAGUAGGGG----------UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 99740 0.66 0.843566
Target:  5'- cUCGUCgAC-C-UCgCCGCCGCCGCGg -3'
miRNA:   3'- aGGUAGgUGaGuAGgGGUGGUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.