miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 5' -54.8 NC_006151.1 + 135121 0.66 0.932507
Target:  5'- cGCGcGGGgcgGGcuGGgcGGGGAcggGCAGa -3'
miRNA:   3'- aCGUaCCCa--CCuuCCuaCCCCU---UGUC- -5'
29492 5' -54.8 NC_006151.1 + 16123 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16158 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16193 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16228 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16263 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16298 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16333 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16368 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16403 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16438 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 16473 0.66 0.932507
Target:  5'- gGgGUGgagacGGUGGAGGGAgaGGGGAGUGGg -3'
miRNA:   3'- aCgUAC-----CCACCUUCCUa-CCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 110546 0.66 0.932507
Target:  5'- ---uUGGGgggacuUGGggGGAuUGGGGGACu- -3'
miRNA:   3'- acguACCC------ACCuuCCU-ACCCCUUGuc -5'
29492 5' -54.8 NC_006151.1 + 5654 0.66 0.92722
Target:  5'- gGCccGGcGgcggGGGAGGcUGGGGAAgCGGg -3'
miRNA:   3'- aCGuaCC-Ca---CCUUCCuACCCCUU-GUC- -5'
29492 5' -54.8 NC_006151.1 + 135000 0.66 0.92722
Target:  5'- cGCGUcuuGGcGGggGcGcgGGGGGGCAGc -3'
miRNA:   3'- aCGUAc--CCaCCuuC-CuaCCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 5260 0.66 0.921684
Target:  5'- gGCccGGG-GGgcGGA-GGGcGAGCGGg -3'
miRNA:   3'- aCGuaCCCaCCuuCCUaCCC-CUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 78644 0.66 0.915899
Target:  5'- cGCGUGcgagcuGGUGGAGGcGGccGGGGcGCGGg -3'
miRNA:   3'- aCGUAC------CCACCUUC-CUa-CCCCuUGUC- -5'
29492 5' -54.8 NC_006151.1 + 84385 0.66 0.909867
Target:  5'- gGCGcGcGG-GGAcGGgcGGGGAGCGGg -3'
miRNA:   3'- aCGUaC-CCaCCUuCCuaCCCCUUGUC- -5'
29492 5' -54.8 NC_006151.1 + 43901 0.66 0.909867
Target:  5'- cGCGgagagGGGUagGGGAGG--GGGGAAgAGa -3'
miRNA:   3'- aCGUa----CCCA--CCUUCCuaCCCCUUgUC- -5'
29492 5' -54.8 NC_006151.1 + 29205 0.66 0.909867
Target:  5'- ----aGGGgcgcGGcGGGGUGGGGAugGGu -3'
miRNA:   3'- acguaCCCa---CCuUCCUACCCCUugUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.