miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29493 5' -52.8 NC_006151.1 + 39169 0.66 0.978678
Target:  5'- cCUCUCGgCgCuGCUCGccgcCUUCGCCCa -3'
miRNA:   3'- aGAGAGUgG-GuUGGGUua--GAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 61553 0.66 0.978678
Target:  5'- gUC-CUCACCCuu----AUCUUCGCCUc -3'
miRNA:   3'- -AGaGAGUGGGuuggguUAGAAGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 26617 0.66 0.973623
Target:  5'- -gUCgUCGCCCAcgcugGCCCcGUCaaagUCGUCCc -3'
miRNA:   3'- agAG-AGUGGGU-----UGGGuUAGa---AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 16006 0.66 0.973623
Target:  5'- cCUCUCcCCCucCCC--UCUguugUGCCCu -3'
miRNA:   3'- aGAGAGuGGGuuGGGuuAGAa---GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 99793 0.66 0.973623
Target:  5'- cCUCgaggCAUggCCGACCCGucCUUCGCgCCc -3'
miRNA:   3'- aGAGa---GUG--GGUUGGGUuaGAAGCG-GG- -5'
29493 5' -52.8 NC_006151.1 + 12727 0.66 0.973623
Target:  5'- aUUCaUCGCCCcGCUCAuccGUCUucaUCGCCg -3'
miRNA:   3'- aGAG-AGUGGGuUGGGU---UAGA---AGCGGg -5'
29493 5' -52.8 NC_006151.1 + 109581 0.66 0.967751
Target:  5'- --aCUCugCCGGCCCGcccgcgcUCUUCaCCCc -3'
miRNA:   3'- agaGAGugGGUUGGGUu------AGAAGcGGG- -5'
29493 5' -52.8 NC_006151.1 + 37733 0.66 0.967751
Target:  5'- ----cCGCCCAggACCCGcUCUggGCCCu -3'
miRNA:   3'- agagaGUGGGU--UGGGUuAGAagCGGG- -5'
29493 5' -52.8 NC_006151.1 + 14800 0.66 0.967751
Target:  5'- gCUCgacCGCCCGcccccgACCCAccgcGUCcgccgCGCCCa -3'
miRNA:   3'- aGAGa--GUGGGU------UGGGU----UAGaa---GCGGG- -5'
29493 5' -52.8 NC_006151.1 + 7868 0.66 0.967751
Target:  5'- cCUCUCcCCCAcCCCucuAUCUcucUCuCCCg -3'
miRNA:   3'- aGAGAGuGGGUuGGGu--UAGA---AGcGGG- -5'
29493 5' -52.8 NC_006151.1 + 6994 0.67 0.965821
Target:  5'- cCUCUCGCgucuacuuugcauguCCGGCCCccgcggcggccAUCUcggcUCGCCCg -3'
miRNA:   3'- aGAGAGUG---------------GGUUGGGu----------UAGA----AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 90957 0.67 0.964491
Target:  5'- gCUCcgUCGCgCCGACCgcGUCgaCGCCCu -3'
miRNA:   3'- aGAG--AGUG-GGUUGGguUAGaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 63812 0.67 0.961007
Target:  5'- --cCUCGCCgGGCCCcgggg-CGCCCu -3'
miRNA:   3'- agaGAGUGGgUUGGGuuagaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 62683 0.67 0.961007
Target:  5'- gUCUCUCGccgccccuguCCCuugucCCCGGUCc-CGCCCc -3'
miRNA:   3'- -AGAGAGU----------GGGuu---GGGUUAGaaGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 7083 0.67 0.961007
Target:  5'- cCUCUgauuugcaUGCCCGGCCCGcucugcggccAUCUUgGCCg -3'
miRNA:   3'- aGAGA--------GUGGGUUGGGU----------UAGAAgCGGg -5'
29493 5' -52.8 NC_006151.1 + 6913 0.67 0.958807
Target:  5'- cCUCUCGCgucuacuuugcauguCCGGCCCcgagggcgccAUCUUgGCCCc -3'
miRNA:   3'- aGAGAGUG---------------GGUUGGGu---------UAGAAgCGGG- -5'
29493 5' -52.8 NC_006151.1 + 43038 0.67 0.957294
Target:  5'- cCUCgaucgCGCCCAGCCaccgCcgUCGCCa -3'
miRNA:   3'- aGAGa----GUGGGUUGGguuaGa-AGCGGg -5'
29493 5' -52.8 NC_006151.1 + 24849 0.67 0.957294
Target:  5'- cUUCUgGCCCAccuucagcaccACCguGUCcgccUCGCCCg -3'
miRNA:   3'- aGAGAgUGGGU-----------UGGguUAGa---AGCGGG- -5'
29493 5' -52.8 NC_006151.1 + 140692 0.67 0.957294
Target:  5'- cCUCUC-CCCAucuCCCcAUCUccUCuCCCa -3'
miRNA:   3'- aGAGAGuGGGUu--GGGuUAGA--AGcGGG- -5'
29493 5' -52.8 NC_006151.1 + 38950 0.67 0.957294
Target:  5'- aCUCUggCGCCCGGCgCucacCUUCGaCCCg -3'
miRNA:   3'- aGAGA--GUGGGUUGgGuua-GAAGC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.