miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 5' -56.2 NC_006151.1 + 36407 0.66 0.91726
Target:  5'- gGGCGcucgucCCCCUCCGCAgcCUCCcCGGc-- -3'
miRNA:   3'- -CCGU------GGGGAGGUGUa-GAGGaGCUagc -5'
29494 5' -56.2 NC_006151.1 + 141383 0.66 0.911448
Target:  5'- gGGCggGCCCCgggcaaacagCgGCGUgUCCggCGAUCGg -3'
miRNA:   3'- -CCG--UGGGGa---------GgUGUAgAGGa-GCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 54181 0.66 0.911448
Target:  5'- gGGCGCCCCcUCGCGgaUCCUC-AUCc -3'
miRNA:   3'- -CCGUGGGGaGGUGUagAGGAGcUAGc -5'
29494 5' -56.2 NC_006151.1 + 37202 0.66 0.911448
Target:  5'- cGGC-CUCCUCCGCcucCUCCUCcgccgCGg -3'
miRNA:   3'- -CCGuGGGGAGGUGua-GAGGAGcua--GC- -5'
29494 5' -56.2 NC_006151.1 + 36754 0.66 0.911448
Target:  5'- uGGCGCCCggagCCcCGUCUCCUCc---- -3'
miRNA:   3'- -CCGUGGGga--GGuGUAGAGGAGcuagc -5'
29494 5' -56.2 NC_006151.1 + 40480 0.66 0.911448
Target:  5'- uGGCcCUCCUCCuCuccuUCUCCUcCGcgCGg -3'
miRNA:   3'- -CCGuGGGGAGGuGu---AGAGGA-GCuaGC- -5'
29494 5' -56.2 NC_006151.1 + 63734 0.66 0.905402
Target:  5'- aGGCGCCacaCCUCCggcGCGUCggcggggcgUCCUCGG-CGc -3'
miRNA:   3'- -CCGUGG---GGAGG---UGUAG---------AGGAGCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 142769 0.66 0.905402
Target:  5'- gGGC-CCCC-CCACAaCUCUcUGGUCu -3'
miRNA:   3'- -CCGuGGGGaGGUGUaGAGGaGCUAGc -5'
29494 5' -56.2 NC_006151.1 + 28017 0.66 0.904785
Target:  5'- gGGgAUCCC-CCGCAUCcgguaccgucgggUCCcgCGAUCGu -3'
miRNA:   3'- -CCgUGGGGaGGUGUAG-------------AGGa-GCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 12835 0.66 0.899125
Target:  5'- cGCcCCCCgcggCCACAccgagccuUCUCCgcgCGGUCc -3'
miRNA:   3'- cCGuGGGGa---GGUGU--------AGAGGa--GCUAGc -5'
29494 5' -56.2 NC_006151.1 + 32391 0.66 0.89262
Target:  5'- aGCGCCCCggcuUCUGCuucuuauUCUCCUCucUCGg -3'
miRNA:   3'- cCGUGGGG----AGGUGu------AGAGGAGcuAGC- -5'
29494 5' -56.2 NC_006151.1 + 36038 0.66 0.89262
Target:  5'- cGGCGCCgcggcuCCUCCgGCGaggaUCUCCUCu-UCGg -3'
miRNA:   3'- -CCGUGG------GGAGG-UGU----AGAGGAGcuAGC- -5'
29494 5' -56.2 NC_006151.1 + 50899 0.66 0.89262
Target:  5'- cGCGCCCC-CCGC--CUCCUguugcuaccgCGAUCa -3'
miRNA:   3'- cCGUGGGGaGGUGuaGAGGA----------GCUAGc -5'
29494 5' -56.2 NC_006151.1 + 113811 0.66 0.89262
Target:  5'- cGGCGCCacggCCUCgCGCucGUCUCcCUCGAgcacacgcUCGg -3'
miRNA:   3'- -CCGUGG----GGAG-GUG--UAGAG-GAGCU--------AGC- -5'
29494 5' -56.2 NC_006151.1 + 36250 0.66 0.88589
Target:  5'- cGGguCCCCggccgCCGgGUC-CCcCGGUCGg -3'
miRNA:   3'- -CCguGGGGa----GGUgUAGaGGaGCUAGC- -5'
29494 5' -56.2 NC_006151.1 + 83338 0.66 0.88589
Target:  5'- aGGCGCgCgUCCACGUgCUCCccggCGcgCGc -3'
miRNA:   3'- -CCGUGgGgAGGUGUA-GAGGa---GCuaGC- -5'
29494 5' -56.2 NC_006151.1 + 27215 0.66 0.88589
Target:  5'- cGGgGCCCCgcgcgCCguggacgcGCAcCUCCUCGGggUCGg -3'
miRNA:   3'- -CCgUGGGGa----GG--------UGUaGAGGAGCU--AGC- -5'
29494 5' -56.2 NC_006151.1 + 137436 0.67 0.878939
Target:  5'- gGGguCCgCCUCCGCGgcCUCCUcCGA-CGa -3'
miRNA:   3'- -CCguGG-GGAGGUGUa-GAGGA-GCUaGC- -5'
29494 5' -56.2 NC_006151.1 + 132872 0.67 0.878939
Target:  5'- cGCGCCCC-CCAgCAgggCCUCG-UCGa -3'
miRNA:   3'- cCGUGGGGaGGU-GUagaGGAGCuAGC- -5'
29494 5' -56.2 NC_006151.1 + 59264 0.67 0.878939
Target:  5'- aGGC-CUCCUcCCACAUCaCCUUGAa-- -3'
miRNA:   3'- -CCGuGGGGA-GGUGUAGaGGAGCUagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.