miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29496 3' -55.8 NC_006151.1 + 93438 0.66 0.913621
Target:  5'- -aGGggGGCgagCGggGGUcgccGCCGCGGGGc -3'
miRNA:   3'- gaCUaaCCGa--GCgaUCG----UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 19270 0.66 0.913621
Target:  5'- -----gGGCUCG-UGGCG-CGCGGGGc -3'
miRNA:   3'- gacuaaCCGAGCgAUCGUgGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 116320 0.66 0.911837
Target:  5'- aUGAcgccGcGCUCGCgcgggcccgcggcgUAGUACCGCGGGa -3'
miRNA:   3'- gACUaa--C-CGAGCG--------------AUCGUGGUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 128052 0.66 0.907592
Target:  5'- -----cGGCggcaGCggcGGCugCGCGGGGg -3'
miRNA:   3'- gacuaaCCGag--CGa--UCGugGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 122369 0.66 0.901326
Target:  5'- gUGcacgGGCUCGaCgaggcGCGCCGCGGGc -3'
miRNA:   3'- gACuaa-CCGAGC-Gau---CGUGGUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 92811 0.66 0.900687
Target:  5'- gUGAcaaggucuUUGGCUCGCUgcugcGGCACgugaagaacgagaCGCGGGc -3'
miRNA:   3'- gACU--------AACCGAGCGA-----UCGUG-------------GUGCCCc -5'
29496 3' -55.8 NC_006151.1 + 72812 0.66 0.894826
Target:  5'- -cGAcgaGCUCGCcGGCGCCcACGGGc -3'
miRNA:   3'- gaCUaacCGAGCGaUCGUGG-UGCCCc -5'
29496 3' -55.8 NC_006151.1 + 53241 0.66 0.894826
Target:  5'- gUGAgcaGGUucUCGCUGGCGCgCACGcGGc -3'
miRNA:   3'- gACUaa-CCG--AGCGAUCGUG-GUGC-CCc -5'
29496 3' -55.8 NC_006151.1 + 45744 0.66 0.888094
Target:  5'- -----aGGCUUcC-AGCGCCugGGGGa -3'
miRNA:   3'- gacuaaCCGAGcGaUCGUGGugCCCC- -5'
29496 3' -55.8 NC_006151.1 + 73035 0.66 0.888094
Target:  5'- -gGAUUGGCgguggCGCggugggGGUG-CGCGGGGu -3'
miRNA:   3'- gaCUAACCGa----GCGa-----UCGUgGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 137411 0.66 0.888094
Target:  5'- -cGGggGGCgcccUCGCcgcCGCCGCGGGGu -3'
miRNA:   3'- gaCUaaCCG----AGCGaucGUGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 123806 0.66 0.88603
Target:  5'- gCUGGccucggacgucuUUGGCcUGCUccacaccacgcugcAGCugCGCGGGGc -3'
miRNA:   3'- -GACU------------AACCGaGCGA--------------UCGugGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 42644 0.67 0.881134
Target:  5'- -----cGGUUUGuCUGGCcgggcauccccGCCGCGGGGa -3'
miRNA:   3'- gacuaaCCGAGC-GAUCG-----------UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 78305 0.67 0.879003
Target:  5'- gCUGGagGGCaUGCUcgacaggcuggacgAGCGCCcCGGGGc -3'
miRNA:   3'- -GACUaaCCGaGCGA--------------UCGUGGuGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 20449 0.67 0.873952
Target:  5'- -gGAgcggGGCUCGggggUGGCGCCGguccccCGGGGg -3'
miRNA:   3'- gaCUaa--CCGAGCg---AUCGUGGU------GCCCC- -5'
29496 3' -55.8 NC_006151.1 + 55470 0.67 0.866551
Target:  5'- -cGGggGGCgcgCGCccGGCGCCGCGGa- -3'
miRNA:   3'- gaCUaaCCGa--GCGa-UCGUGGUGCCcc -5'
29496 3' -55.8 NC_006151.1 + 124675 0.67 0.866551
Target:  5'- -----cGGCcugCGCgagggGGC-CCACGGGGa -3'
miRNA:   3'- gacuaaCCGa--GCGa----UCGuGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 90993 0.67 0.866551
Target:  5'- gCUGGcUGGCgCGCUccAGCACgGCGGu- -3'
miRNA:   3'- -GACUaACCGaGCGA--UCGUGgUGCCcc -5'
29496 3' -55.8 NC_006151.1 + 73610 0.67 0.866551
Target:  5'- ----cUGGCgccgcaGCUGGUgggugaagGCCACGGGGc -3'
miRNA:   3'- gacuaACCGag----CGAUCG--------UGGUGCCCC- -5'
29496 3' -55.8 NC_006151.1 + 61187 0.67 0.858938
Target:  5'- ----gUGGC-CGCcAGCGCCGCGGa- -3'
miRNA:   3'- gacuaACCGaGCGaUCGUGGUGCCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.