miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 5' -56.8 NC_006151.1 + 140067 0.66 0.871475
Target:  5'- gGCGGCGCGcgugcuCCGcGAGAUGGUGCu- -3'
miRNA:   3'- -UGCUGUGCuc----GGCcUUCUGCCACGuu -5'
29497 5' -56.8 NC_006151.1 + 4235 0.66 0.871475
Target:  5'- -gGGCGCGggcAGCCGGA--GCGG-GCAGg -3'
miRNA:   3'- ugCUGUGC---UCGGCCUucUGCCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 141867 0.66 0.871475
Target:  5'- cGCGcccuCugGuGCCGGAGGGcCGG-GCAu -3'
miRNA:   3'- -UGCu---GugCuCGGCCUUCU-GCCaCGUu -5'
29497 5' -56.8 NC_006151.1 + 56569 0.66 0.871475
Target:  5'- gGCGACGCGccGCCGcccGAcGGGCuGGUGCGGa -3'
miRNA:   3'- -UGCUGUGCu-CGGC---CU-UCUG-CCACGUU- -5'
29497 5' -56.8 NC_006151.1 + 86726 0.66 0.871475
Target:  5'- cGCGGCGCGccGCCGcGAGGcCGGcgUGCGc -3'
miRNA:   3'- -UGCUGUGCu-CGGC-CUUCuGCC--ACGUu -5'
29497 5' -56.8 NC_006151.1 + 89719 0.66 0.871475
Target:  5'- gGCGGCGCcGGCCGcGGccGCGGUGguGg -3'
miRNA:   3'- -UGCUGUGcUCGGC-CUucUGCCACguU- -5'
29497 5' -56.8 NC_006151.1 + 119774 0.66 0.871475
Target:  5'- cCGGCGCGcGCauCGGcGAGACGGUGaCGGa -3'
miRNA:   3'- uGCUGUGCuCG--GCC-UUCUGCCAC-GUU- -5'
29497 5' -56.8 NC_006151.1 + 122661 0.66 0.871475
Target:  5'- aGCGGCGCGAgcGCCGcGccGA-GGUGCGc -3'
miRNA:   3'- -UGCUGUGCU--CGGC-CuuCUgCCACGUu -5'
29497 5' -56.8 NC_006151.1 + 72495 0.66 0.870737
Target:  5'- gGCGGCGCGAGCgaaaGAAGACacugacgcgggcgGGUGCc- -3'
miRNA:   3'- -UGCUGUGCUCGgc--CUUCUG-------------CCACGuu -5'
29497 5' -56.8 NC_006151.1 + 122028 0.66 0.870737
Target:  5'- uCGACACGuacggcgGGCgCGuGGAGACGGagcUGCAGu -3'
miRNA:   3'- uGCUGUGC-------UCG-GC-CUUCUGCC---ACGUU- -5'
29497 5' -56.8 NC_006151.1 + 27488 0.66 0.863991
Target:  5'- uCGGCgggguggugggaACGGGgUGGGAGGgGGUGCGAu -3'
miRNA:   3'- uGCUG------------UGCUCgGCCUUCUgCCACGUU- -5'
29497 5' -56.8 NC_006151.1 + 99395 0.66 0.863991
Target:  5'- gACGACuACGGGcCCGGGcuGGACuacGUGCGc -3'
miRNA:   3'- -UGCUG-UGCUC-GGCCU--UCUGc--CACGUu -5'
29497 5' -56.8 NC_006151.1 + 122426 0.66 0.863991
Target:  5'- gACGcCGcCGAGgcCCGGGAGGCGGagGCGg -3'
miRNA:   3'- -UGCuGU-GCUC--GGCCUUCUGCCa-CGUu -5'
29497 5' -56.8 NC_006151.1 + 61782 0.66 0.863991
Target:  5'- uGCGGCGCGAgGCCGGccGGCuG-GCGu -3'
miRNA:   3'- -UGCUGUGCU-CGGCCuuCUGcCaCGUu -5'
29497 5' -56.8 NC_006151.1 + 64481 0.66 0.863991
Target:  5'- cGCGGCggggacgcccGCGGGCgCGGgcGGCGG-GCGc -3'
miRNA:   3'- -UGCUG----------UGCUCG-GCCuuCUGCCaCGUu -5'
29497 5' -56.8 NC_006151.1 + 83020 0.66 0.863991
Target:  5'- cGCGGCGaGGGCCccaGGucGACGGUGgAGa -3'
miRNA:   3'- -UGCUGUgCUCGG---CCuuCUGCCACgUU- -5'
29497 5' -56.8 NC_006151.1 + 10061 0.66 0.863991
Target:  5'- aGCGGCuccCGAGuCCGGGaaggaaAGGCGG-GCGGa -3'
miRNA:   3'- -UGCUGu--GCUC-GGCCU------UCUGCCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 103962 0.66 0.861705
Target:  5'- cGCGGCgcgccagcgcgucgGCGAGCUGGA-GGCGGccgugGCGg -3'
miRNA:   3'- -UGCUG--------------UGCUCGGCCUuCUGCCa----CGUu -5'
29497 5' -56.8 NC_006151.1 + 121906 0.66 0.856296
Target:  5'- cGCGuacGCGCGGGCCgaGGggGAcCGcGUGCu- -3'
miRNA:   3'- -UGC---UGUGCUCGG--CCuuCU-GC-CACGuu -5'
29497 5' -56.8 NC_006151.1 + 113026 0.66 0.856296
Target:  5'- gACGACGCGugcGCCGGGugcugcGCGGcgGCGGa -3'
miRNA:   3'- -UGCUGUGCu--CGGCCUuc----UGCCa-CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.