miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29504 5' -57.3 NC_006151.1 + 90288 0.66 0.8689
Target:  5'- gAGCugGAGGCccaUGcacGCGgggaugaaccggucCACGAGGGg -3'
miRNA:   3'- gUCGugCUCCG---AC---CGCaa------------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142378 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142404 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142430 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142456 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142482 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142508 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 142534 0.66 0.868165
Target:  5'- gGGUugGGGGaaagGGgGga-ACGAGGGg -3'
miRNA:   3'- gUCGugCUCCga--CCgCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 133395 0.66 0.861454
Target:  5'- gCGGC-CGGGGCcgagcgGGCGgucuuggccgcggaCGCGGGGGu -3'
miRNA:   3'- -GUCGuGCUCCGa-----CCGCaa------------GUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 70090 0.66 0.860699
Target:  5'- -uGCGCGuGGGC-GGCGaagggCGCGAGcGGg -3'
miRNA:   3'- guCGUGC-UCCGaCCGCaa---GUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 106668 0.66 0.860699
Target:  5'- -uGCGCGAGGCcgcGGCGcucggCGCGccGGGc -3'
miRNA:   3'- guCGUGCUCCGa--CCGCaa---GUGCu-CCC- -5'
29504 5' -57.3 NC_006151.1 + 59342 0.66 0.860699
Target:  5'- cCAGCGCGcucaGGGCc-GCGcgCACGGGGc -3'
miRNA:   3'- -GUCGUGC----UCCGacCGCaaGUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 33955 0.66 0.85303
Target:  5'- gGGCuCGGGGCgggacgcGGCGcccgCGCGGGGa -3'
miRNA:   3'- gUCGuGCUCCGa------CCGCaa--GUGCUCCc -5'
29504 5' -57.3 NC_006151.1 + 90350 0.66 0.85303
Target:  5'- uGGcCAUGAGGCUGGCGacgC-CGAGc- -3'
miRNA:   3'- gUC-GUGCUCCGACCGCaa-GuGCUCcc -5'
29504 5' -57.3 NC_006151.1 + 20809 0.66 0.85303
Target:  5'- aCAGcCGCGgaAGGCcucgUGGUGcaCGCGGGGGc -3'
miRNA:   3'- -GUC-GUGC--UCCG----ACCGCaaGUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 21318 0.66 0.85303
Target:  5'- uGGCGCGAGacGCccGGCGcg-GCGGGGGu -3'
miRNA:   3'- gUCGUGCUC--CGa-CCGCaagUGCUCCC- -5'
29504 5' -57.3 NC_006151.1 + 111257 0.66 0.85303
Target:  5'- gCAGCAgCGAGGCcgGGaaccgCGCGGGcGGg -3'
miRNA:   3'- -GUCGU-GCUCCGa-CCgcaa-GUGCUC-CC- -5'
29504 5' -57.3 NC_006151.1 + 117297 0.66 0.85303
Target:  5'- -cGCGCGAGcuGCUcGGCGcUCGCcacgccGAGGGc -3'
miRNA:   3'- guCGUGCUC--CGA-CCGCaAGUG------CUCCC- -5'
29504 5' -57.3 NC_006151.1 + 130793 0.66 0.85303
Target:  5'- -cGCGCGuccaGCUGGCGUaCGCGGcguccGGGu -3'
miRNA:   3'- guCGUGCuc--CGACCGCAaGUGCU-----CCC- -5'
29504 5' -57.3 NC_006151.1 + 21494 0.66 0.85303
Target:  5'- gCGGcCGgGGGGCgcgGGCG-UCACcGGGGc -3'
miRNA:   3'- -GUC-GUgCUCCGa--CCGCaAGUGcUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.