miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29506 5' -54.3 NC_006151.1 + 27131 0.66 0.962709
Target:  5'- aGAcGGCGAUGCCgcgaaagaggcgguuCACGuCGGCCccgAGGc -3'
miRNA:   3'- aCUaCUGCUACGG---------------GUGCuGCUGG---UCC- -5'
29506 5' -54.3 NC_006151.1 + 76830 0.66 0.961322
Target:  5'- ---aGugGcgGCCCGCGuccggGCGACguaCAGGa -3'
miRNA:   3'- acuaCugCuaCGGGUGC-----UGCUG---GUCC- -5'
29506 5' -54.3 NC_006151.1 + 122319 0.66 0.961322
Target:  5'- aGcUGGCGGUGC--GCGugGACCccgAGGa -3'
miRNA:   3'- aCuACUGCUACGggUGCugCUGG---UCC- -5'
29506 5' -54.3 NC_006151.1 + 130695 0.66 0.961322
Target:  5'- nGAUGucCGGggGCCCGacggGGCGGCCcGGGg -3'
miRNA:   3'- aCUACu-GCUa-CGGGUg---CUGCUGG-UCC- -5'
29506 5' -54.3 NC_006151.1 + 4930 0.66 0.961322
Target:  5'- gGGUGAgcaGcgGCCCGuCGGuCGGCgGGGg -3'
miRNA:   3'- aCUACUg--CuaCGGGU-GCU-GCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 21190 0.66 0.961322
Target:  5'- ---cGuCGGUGUCCGCGGgacCGcCCAGGa -3'
miRNA:   3'- acuaCuGCUACGGGUGCU---GCuGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 21287 0.66 0.961322
Target:  5'- ----cGCGGUGCCCGugcCGACGAUCAc- -3'
miRNA:   3'- acuacUGCUACGGGU---GCUGCUGGUcc -5'
29506 5' -54.3 NC_006151.1 + 98470 0.66 0.961322
Target:  5'- -uGUGGCGccUGCgCCACGACuggGACgAGGg -3'
miRNA:   3'- acUACUGCu-ACG-GGUGCUG---CUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 133465 0.66 0.961322
Target:  5'- ---cGGuCGAgGCCCGCGagGCGGCCGcGGg -3'
miRNA:   3'- acuaCU-GCUaCGGGUGC--UGCUGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 2730 0.66 0.9577
Target:  5'- cGcgGGCGAagcaggccggGCCCACGAUGgaGCUAGa -3'
miRNA:   3'- aCuaCUGCUa---------CGGGUGCUGC--UGGUCc -5'
29506 5' -54.3 NC_006151.1 + 55551 0.66 0.9577
Target:  5'- gGgcGACGAcGCCUACGugG-CCAa- -3'
miRNA:   3'- aCuaCUGCUaCGGGUGCugCuGGUcc -5'
29506 5' -54.3 NC_006151.1 + 56082 0.66 0.9577
Target:  5'- cGA-GACGGUGUCCuGCGACGAguaCCGc- -3'
miRNA:   3'- aCUaCUGCUACGGG-UGCUGCU---GGUcc -5'
29506 5' -54.3 NC_006151.1 + 65791 0.66 0.9577
Target:  5'- cGAUGGCGccGCCCggcGCGgACGuGCCGcGGu -3'
miRNA:   3'- aCUACUGCuaCGGG---UGC-UGC-UGGU-CC- -5'
29506 5' -54.3 NC_006151.1 + 96065 0.66 0.9577
Target:  5'- aGcUGGCGAgcgaGCCgCGCGcGCGGCCGGc -3'
miRNA:   3'- aCuACUGCUa---CGG-GUGC-UGCUGGUCc -5'
29506 5' -54.3 NC_006151.1 + 135466 0.66 0.9577
Target:  5'- aGGUGcGCGccagcGUGUCCGCG-CGgGCCAGGc -3'
miRNA:   3'- aCUAC-UGC-----UACGGGUGCuGC-UGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 90730 0.66 0.9577
Target:  5'- cGgcGACGGUGgCgGCGGCGcCCucGGGg -3'
miRNA:   3'- aCuaCUGCUACgGgUGCUGCuGG--UCC- -5'
29506 5' -54.3 NC_006151.1 + 141422 0.66 0.957325
Target:  5'- gUGcgGGCGcgGCCCggcgcgaACGACGuCCccguAGGa -3'
miRNA:   3'- -ACuaCUGCuaCGGG-------UGCUGCuGG----UCC- -5'
29506 5' -54.3 NC_006151.1 + 45284 0.66 0.957325
Target:  5'- gGGUGAgcggcggucguccCGAgGaCCCGCGA-GGCCGGGa -3'
miRNA:   3'- aCUACU-------------GCUaC-GGGUGCUgCUGGUCC- -5'
29506 5' -54.3 NC_006151.1 + 31954 0.66 0.955418
Target:  5'- gUGAUGACGccggggacgcgggacGUGCCCGCcgccugggaGcCGGCgAGGa -3'
miRNA:   3'- -ACUACUGC---------------UACGGGUG---------CuGCUGgUCC- -5'
29506 5' -54.3 NC_006151.1 + 21315 0.66 0.953851
Target:  5'- cGGUGGCGcgagacGCCCgGCG-CGGCgGGGg -3'
miRNA:   3'- aCUACUGCua----CGGG-UGCuGCUGgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.