miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29507 5' -60.2 NC_006151.1 + 72256 0.66 0.693381
Target:  5'- cGGCCGCCGacgccGAGCGGCguggCCAGCaugCGg -3'
miRNA:   3'- -UCGGUGGUa----CUCGUCGg---GGUCGa--GCa -5'
29507 5' -60.2 NC_006151.1 + 103817 0.66 0.693381
Target:  5'- cGGCgGCCGUGgcGGCGGCCgUggagauGCUCGg -3'
miRNA:   3'- -UCGgUGGUAC--UCGUCGGgGu-----CGAGCa -5'
29507 5' -60.2 NC_006151.1 + 79779 0.66 0.693381
Target:  5'- cGGCgGCCGgaucGCGGCCUCGGCgCGg -3'
miRNA:   3'- -UCGgUGGUacu-CGUCGGGGUCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 60626 0.66 0.693381
Target:  5'- cGCCGCCGUcgucgGGGCggGGCuCCCGGCcCGc -3'
miRNA:   3'- uCGGUGGUA-----CUCG--UCG-GGGUCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 59407 0.66 0.693381
Target:  5'- cGCagCACCucGAGCAGCagcggcgCCAGCUCGg -3'
miRNA:   3'- uCG--GUGGuaCUCGUCGg------GGUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 59026 0.66 0.692379
Target:  5'- aAGCCGCCcugggucagguacAUGAGcCGGCUCCAGg-CGg -3'
miRNA:   3'- -UCGGUGG-------------UACUC-GUCGGGGUCgaGCa -5'
29507 5' -60.2 NC_006151.1 + 86928 0.66 0.683345
Target:  5'- cGCCcaGCCu---GgAGUCCCAGCUCGg -3'
miRNA:   3'- uCGG--UGGuacuCgUCGGGGUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 87448 0.66 0.683345
Target:  5'- cGCCGCCGc-GGCcGCCCCcGCUCc- -3'
miRNA:   3'- uCGGUGGUacUCGuCGGGGuCGAGca -5'
29507 5' -60.2 NC_006151.1 + 107720 0.66 0.683345
Target:  5'- aGGCCGCCGcGgcccccaagcAGCAGCCCCgggAGCcCGc -3'
miRNA:   3'- -UCGGUGGUaC----------UCGUCGGGG---UCGaGCa -5'
29507 5' -60.2 NC_006151.1 + 120202 0.66 0.683345
Target:  5'- -cCCACCAaGGGCAGCgcggagccCCCGGCgcgCGa -3'
miRNA:   3'- ucGGUGGUaCUCGUCG--------GGGUCGa--GCa -5'
29507 5' -60.2 NC_006151.1 + 127877 0.66 0.683345
Target:  5'- cGCCGCCGUc--CAcCUCCAGCUCGUc -3'
miRNA:   3'- uCGGUGGUAcucGUcGGGGUCGAGCA- -5'
29507 5' -60.2 NC_006151.1 + 50779 0.66 0.683345
Target:  5'- cGGCCGCCccGAc--GCCCCAGCUgcCGa -3'
miRNA:   3'- -UCGGUGGuaCUcguCGGGGUCGA--GCa -5'
29507 5' -60.2 NC_006151.1 + 54303 0.66 0.683345
Target:  5'- aGGCCGCCGUGcGGCAGaUCCAGUcCa- -3'
miRNA:   3'- -UCGGUGGUAC-UCGUCgGGGUCGaGca -5'
29507 5' -60.2 NC_006151.1 + 81350 0.66 0.683345
Target:  5'- cGCCGCCGcGcccGgGGCCCCGGCgggCGc -3'
miRNA:   3'- uCGGUGGUaCu--CgUCGGGGUCGa--GCa -5'
29507 5' -60.2 NC_006151.1 + 15645 0.66 0.677303
Target:  5'- gGGCCAgCGUGGGCgAcgacgacguguuugaGCCCCccgaggacGGCUCGg -3'
miRNA:   3'- -UCGGUgGUACUCG-U---------------CGGGG--------UCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 12286 0.66 0.673268
Target:  5'- gGGCCcauucACCAUcgccGCGGUCCgAGCUCGg -3'
miRNA:   3'- -UCGG-----UGGUAcu--CGUCGGGgUCGAGCa -5'
29507 5' -60.2 NC_006151.1 + 40085 0.66 0.673268
Target:  5'- cGGgCGCCG-GGGcCGGCCCCGGCgaggaCGg -3'
miRNA:   3'- -UCgGUGGUaCUC-GUCGGGGUCGa----GCa -5'
29507 5' -60.2 NC_006151.1 + 94607 0.66 0.673268
Target:  5'- cGCgCACaugucgAUGAGCAGCUCCuGgUCGUa -3'
miRNA:   3'- uCG-GUGg-----UACUCGUCGGGGuCgAGCA- -5'
29507 5' -60.2 NC_006151.1 + 65815 0.66 0.672258
Target:  5'- uGCCGCgGuggaUGGGCGGCcgcgccagcgcggCCCGGCUCa- -3'
miRNA:   3'- uCGGUGgU----ACUCGUCG-------------GGGUCGAGca -5'
29507 5' -60.2 NC_006151.1 + 64528 0.66 0.671248
Target:  5'- aGGCCGCCGcggccgcgucggGGGCGGCgaggccguggcgCgCCAGCUCGa -3'
miRNA:   3'- -UCGGUGGUa-----------CUCGUCG------------G-GGUCGAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.