Results 81 - 100 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29515 | 3' | -61.4 | NC_006151.1 | + | 103183 | 0.68 | 0.496858 |
Target: 5'- -cGcCAUGgaCGCcgCCCugGcGGCCGCCc -3' miRNA: 3'- aaC-GUACgaGCG--GGGugCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 69285 | 0.68 | 0.496858 |
Target: 5'- -gGCG-GCgCGCCaCCAgGgacacgGGCCGCCg -3' miRNA: 3'- aaCGUaCGaGCGG-GGUgCa-----CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 52368 | 0.68 | 0.494032 |
Target: 5'- -cGCcgGCgCGCCCCcggggcccgcggggGCGgcggGcGCCGCCg -3' miRNA: 3'- aaCGuaCGaGCGGGG--------------UGCa---C-CGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 50316 | 0.68 | 0.493092 |
Target: 5'- cUGCAggccaacgagacgGC-CGCCCgGCGccUGGCCGCg -3' miRNA: 3'- aACGUa------------CGaGCGGGgUGC--ACCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 38034 | 0.68 | 0.487466 |
Target: 5'- cUGCccGCgccCGCCCgCGCcccGGCCGCCc -3' miRNA: 3'- aACGuaCGa--GCGGG-GUGca-CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 117617 | 0.68 | 0.496858 |
Target: 5'- -cGUggGCUCGCgcgcgagcgugCCCACGUGcacGCCGCg -3' miRNA: 3'- aaCGuaCGAGCG-----------GGGUGCAC---CGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 39916 | 0.68 | 0.496858 |
Target: 5'- -cGCGggcUGCUggaGCCCgACGccgaGGCCGCCc -3' miRNA: 3'- aaCGU---ACGAg--CGGGgUGCa---CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 116516 | 0.68 | 0.500638 |
Target: 5'- -aGC-UGUUCuGgCCCGCGUcguagacgcggaacuGGCCGCCg -3' miRNA: 3'- aaCGuACGAG-CgGGGUGCA---------------CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 95677 | 0.68 | 0.525502 |
Target: 5'- -gGCGcGCUCGCCguCCAgGUG-CCGCUg -3' miRNA: 3'- aaCGUaCGAGCGG--GGUgCACcGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 87290 | 0.68 | 0.525502 |
Target: 5'- cUGCAcGCgcCGCCCCccucgccCGUGGCgcaCGCCg -3' miRNA: 3'- aACGUaCGa-GCGGGGu------GCACCG---GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 58739 | 0.68 | 0.525502 |
Target: 5'- -cGCGUcGCgcaGCgCCGCGgccaccgcGGCCGCCg -3' miRNA: 3'- aaCGUA-CGag-CGgGGUGCa-------CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 85748 | 0.68 | 0.525502 |
Target: 5'- -cGCA-GCUCuuCCCCGgGcUGGCCGCg -3' miRNA: 3'- aaCGUaCGAGc-GGGGUgC-ACCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 53088 | 0.68 | 0.525502 |
Target: 5'- -cGCAggUGCUCGUCCgucaGCGggaGGCCGUa -3' miRNA: 3'- aaCGU--ACGAGCGGGg---UGCa--CCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 11666 | 0.68 | 0.525502 |
Target: 5'- -cGCGuuUGCUacgaucccugCGCCCgACGgGGCCGCg -3' miRNA: 3'- aaCGU--ACGA----------GCGGGgUGCaCCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 9470 | 0.68 | 0.525502 |
Target: 5'- -cGCGUccGCUUcgGCCCCcCGcGGCCGCg -3' miRNA: 3'- aaCGUA--CGAG--CGGGGuGCaCCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 99526 | 0.68 | 0.525502 |
Target: 5'- cUGCAUgGCgccgCGCCCgcccacggagCACGUGGgCGCg -3' miRNA: 3'- aACGUA-CGa---GCGGG----------GUGCACCgGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 134311 | 0.68 | 0.506331 |
Target: 5'- aUUGCAcgccGCUgCGCCUCGCGccgGGCauCGCCa -3' miRNA: 3'- -AACGUa---CGA-GCGGGGUGCa--CCG--GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 99631 | 0.68 | 0.506331 |
Target: 5'- -cGCGcGCgagGCCCucaaCACGUGGCuCGCCu -3' miRNA: 3'- aaCGUaCGag-CGGG----GUGCACCG-GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 97698 | 0.68 | 0.506331 |
Target: 5'- -aGCcgGuCUUGCgUCACGUGGCCcaggaGCCc -3' miRNA: 3'- aaCGuaC-GAGCGgGGUGCACCGG-----CGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 18522 | 0.68 | 0.505381 |
Target: 5'- -aGCAUGCgCGUCCCcgcccGCGUcggcacccggaacGGCCGCg -3' miRNA: 3'- aaCGUACGaGCGGGG-----UGCA-------------CCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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