Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29515 | 3' | -61.4 | NC_006151.1 | + | 101910 | 0.71 | 0.343115 |
Target: 5'- -aGCAUGCcCaagcggcgccgGCCCC-CGUGGCCGgCg -3' miRNA: 3'- aaCGUACGaG-----------CGGGGuGCACCGGCgG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 83424 | 0.71 | 0.321048 |
Target: 5'- gUUGCcgccgggggGCUC-CCCgggcaGCGUGGCCGCCa -3' miRNA: 3'- -AACGua-------CGAGcGGGg----UGCACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 38208 | 0.71 | 0.320331 |
Target: 5'- -aGCGUggacgggGCcCGCgCCCGCGaGGCCGCCu -3' miRNA: 3'- aaCGUA-------CGaGCG-GGGUGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 64192 | 0.71 | 0.366254 |
Target: 5'- -cGCccGCgaUCGCCCCgggcagguccgGCGUGGgCGCCu -3' miRNA: 3'- aaCGuaCG--AGCGGGG-----------UGCACCgGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 44013 | 0.71 | 0.335639 |
Target: 5'- -cGCA-GCcccCGCCCCGCGgggagccGGCCGUCg -3' miRNA: 3'- aaCGUaCGa--GCGGGGUGCa------CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 128194 | 0.71 | 0.344624 |
Target: 5'- -aGCGUGCcgcgcuccauggCGCCCCAggcgugcgacgagcuCGUGGgCGCCa -3' miRNA: 3'- aaCGUACGa-----------GCGGGGU---------------GCACCgGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 9041 | 0.71 | 0.3261 |
Target: 5'- -cGCcgGggCGCCCCGCGUgcuccgggggcgccGGCCgGCCa -3' miRNA: 3'- aaCGuaCgaGCGGGGUGCA--------------CCGG-CGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 86151 | 0.71 | 0.366254 |
Target: 5'- -gGCGgggaGCUCGCgCUGacgcgcgagauCGUGGCCGCCg -3' miRNA: 3'- aaCGUa---CGAGCGgGGU-----------GCACCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 136851 | 0.71 | 0.335639 |
Target: 5'- -cGCcgGCcucgCGCgCCGCGUGaCCGCCg -3' miRNA: 3'- aaCGuaCGa---GCGgGGUGCACcGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 141752 | 0.7 | 0.390446 |
Target: 5'- -cGCGggGCgcgCGCCCCG-GUGGCguCGCCg -3' miRNA: 3'- aaCGUa-CGa--GCGGGGUgCACCG--GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 62286 | 0.7 | 0.39624 |
Target: 5'- cUGCGUGCUCGUggccagcgcggccuUCgGCGUGuCCGCCc -3' miRNA: 3'- aACGUACGAGCG--------------GGgUGCACcGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 45183 | 0.7 | 0.407144 |
Target: 5'- -gGCGUGCcCGCCaCCACGgacGGCgacggggugCGCCg -3' miRNA: 3'- aaCGUACGaGCGG-GGUGCa--CCG---------GCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 50628 | 0.7 | 0.407144 |
Target: 5'- -aGCGUGCaCGCCUCgGCGacGGCCGCg -3' miRNA: 3'- aaCGUACGaGCGGGG-UGCa-CCGGCGg -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 87436 | 0.7 | 0.407144 |
Target: 5'- -gGcCGUGCcCGCCgCCGcCGcGGCCGCCc -3' miRNA: 3'- aaC-GUACGaGCGG-GGU-GCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 77523 | 0.7 | 0.407144 |
Target: 5'- -gGCGcGcCUCGgCCgCGCGUgGGCCGCCc -3' miRNA: 3'- aaCGUaC-GAGCgGG-GUGCA-CCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 122407 | 0.7 | 0.415659 |
Target: 5'- -gGCGgcGCUCGCCgC-CGUGgacGCCGCCg -3' miRNA: 3'- aaCGUa-CGAGCGGgGuGCAC---CGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 123240 | 0.7 | 0.415659 |
Target: 5'- -cGCAcgGCgcgCGUUCUGCGaGGCCGCCg -3' miRNA: 3'- aaCGUa-CGa--GCGGGGUGCaCCGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 107101 | 0.7 | 0.415659 |
Target: 5'- -cGCGUGCUCuggGCgCCGCccGaGCCGCCg -3' miRNA: 3'- aaCGUACGAG---CGgGGUGcaC-CGGCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 7008 | 0.7 | 0.374202 |
Target: 5'- uUUGCAUGUcCgGCCCC-CGcGGCgGCCa -3' miRNA: 3'- -AACGUACGaG-CGGGGuGCaCCGgCGG- -5' |
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29515 | 3' | -61.4 | NC_006151.1 | + | 23906 | 0.7 | 0.382267 |
Target: 5'- -gGCGUcggucGCggGCCCgACG-GGCCGCCg -3' miRNA: 3'- aaCGUA-----CGagCGGGgUGCaCCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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