miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 77283 0.66 0.62449
Target:  5'- -cGCucacccauuUGC-CGCgCCGCGUGugcccGCCGCCa -3'
miRNA:   3'- aaCGu--------ACGaGCGgGGUGCAC-----CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 77523 0.7 0.407144
Target:  5'- -gGCGcGcCUCGgCCgCGCGUgGGCCGCCc -3'
miRNA:   3'- aaCGUaC-GAGCgGG-GUGCA-CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 78735 0.66 0.634531
Target:  5'- -cGCGcGCUgCGgCCCACGU--CCGCCg -3'
miRNA:   3'- aaCGUaCGA-GCgGGGUGCAccGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 79097 0.71 0.335639
Target:  5'- -cGCGaGCgagCGCCCCuccguCGUGGCUggGCCa -3'
miRNA:   3'- aaCGUaCGa--GCGGGGu----GCACCGG--CGG- -5'
29515 3' -61.4 NC_006151.1 + 81474 0.75 0.186716
Target:  5'- -aGCAggcugaaggGCUCGUUCCACGcGGCCGUCg -3'
miRNA:   3'- aaCGUa--------CGAGCGGGGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 81539 0.67 0.553765
Target:  5'- -cGCGgcgGCgCGCUCCGCGgugcacaUGGCCGUg -3'
miRNA:   3'- aaCGUa--CGaGCGGGGUGC-------ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 81991 0.67 0.573518
Target:  5'- cUGCAccacgGCg-GCCagggcggCCGCGUGcGCCGCCg -3'
miRNA:   3'- aACGUa----CGagCGG-------GGUGCAC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 83424 0.71 0.321048
Target:  5'- gUUGCcgccgggggGCUC-CCCgggcaGCGUGGCCGCCa -3'
miRNA:   3'- -AACGua-------CGAGcGGGg----UGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 84258 0.66 0.604432
Target:  5'- -aGCAUGCgcgUGCUCgACGUGaCgCGCCu -3'
miRNA:   3'- aaCGUACGa--GCGGGgUGCACcG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 84475 0.67 0.544941
Target:  5'- -cGCGUgGUUCGCCUU-CGaGGCCGCUg -3'
miRNA:   3'- aaCGUA-CGAGCGGGGuGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 84603 0.75 0.186716
Target:  5'- -cGCAcGCgaacgcgCGCCgCCGCGcGGCCGCCg -3'
miRNA:   3'- aaCGUaCGa------GCGG-GGUGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 84937 0.67 0.564606
Target:  5'- -gGCGUGCUCuUCggCACGUGGUaCGCCa -3'
miRNA:   3'- aaCGUACGAGcGGg-GUGCACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 85345 0.8 0.089399
Target:  5'- -aGCGUGCUCGCCgCGC-UGGCgCGCCu -3'
miRNA:   3'- aaCGUACGAGCGGgGUGcACCG-GCGG- -5'
29515 3' -61.4 NC_006151.1 + 85606 0.66 0.62449
Target:  5'- -gGCGcGCUCGUgCCCaacGCGccGCCGCCg -3'
miRNA:   3'- aaCGUaCGAGCG-GGG---UGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 85748 0.68 0.525502
Target:  5'- -cGCA-GCUCuuCCCCGgGcUGGCCGCg -3'
miRNA:   3'- aaCGUaCGAGc-GGGGUgC-ACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 86151 0.71 0.366254
Target:  5'- -gGCGgggaGCUCGCgCUGacgcgcgagauCGUGGCCGCCg -3'
miRNA:   3'- aaCGUa---CGAGCGgGGU-----------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 86324 0.68 0.478158
Target:  5'- -gGcCGUGCUCGCCCgCGcCGUGGgC-CCg -3'
miRNA:   3'- aaC-GUACGAGCGGG-GU-GCACCgGcGG- -5'
29515 3' -61.4 NC_006151.1 + 86726 0.67 0.57451
Target:  5'- -cGCG-GCgCGCCgCCGCGaGGCCGgCg -3'
miRNA:   3'- aaCGUaCGaGCGG-GGUGCaCCGGCgG- -5'
29515 3' -61.4 NC_006151.1 + 87290 0.68 0.525502
Target:  5'- cUGCAcGCgcCGCCCCccucgccCGUGGCgcaCGCCg -3'
miRNA:   3'- aACGUaCGa-GCGGGGu------GCACCG---GCGG- -5'
29515 3' -61.4 NC_006151.1 + 87436 0.7 0.407144
Target:  5'- -gGcCGUGCcCGCCgCCGcCGcGGCCGCCc -3'
miRNA:   3'- aaC-GUACGaGCGG-GGU-GCaCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.