miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29515 3' -61.4 NC_006151.1 + 115207 0.67 0.554748
Target:  5'- -cGCggGCgcgCGCgCgAuCGUGGCCGCUg -3'
miRNA:   3'- aaCGuaCGa--GCGgGgU-GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 114223 0.72 0.306936
Target:  5'- -cGCGUGUUCcugGCCUCG-GUGGCCGCg -3'
miRNA:   3'- aaCGUACGAG---CGGGGUgCACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 114115 0.82 0.060292
Target:  5'- -gGCGgcUGCU-GCCCCACGUGcGCCGCCg -3'
miRNA:   3'- aaCGU--ACGAgCGGGGUGCAC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 112744 0.67 0.535191
Target:  5'- gUGCGccacgGC-CGUCUU-CGUGGCCGCCu -3'
miRNA:   3'- aACGUa----CGaGCGGGGuGCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 112221 0.68 0.496858
Target:  5'- -cGCAgucgcGCUCGCUCguCGccGCCGCCa -3'
miRNA:   3'- aaCGUa----CGAGCGGGguGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 111130 0.72 0.280149
Target:  5'- -cGCgucuGUGCgCGCCCCcgcgcGCGcGGCCGCCu -3'
miRNA:   3'- aaCG----UACGaGCGGGG-----UGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 110184 0.66 0.594429
Target:  5'- -cGCGUGC-CGCCUgauaGCGc-GCCGCCu -3'
miRNA:   3'- aaCGUACGaGCGGGg---UGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 109728 0.73 0.273749
Target:  5'- -cGCugcGCUCGCCgCUGgagcggaugcCGUGGCCGCCg -3'
miRNA:   3'- aaCGua-CGAGCGG-GGU----------GCACCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 109536 0.66 0.638547
Target:  5'- -aGCAg---CGCCCCccggaggcgccguggACGUGGCCcgaGCCg -3'
miRNA:   3'- aaCGUacgaGCGGGG---------------UGCACCGG---CGG- -5'
29515 3' -61.4 NC_006151.1 + 109260 0.66 0.634531
Target:  5'- -cGCugGCg-GCCCCgACGUcgcuGGCCGCCc -3'
miRNA:   3'- aaCGuaCGagCGGGG-UGCA----CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 108434 0.66 0.62449
Target:  5'- -gGCGggaGC-CGCCuCCcCG-GGCCGCCc -3'
miRNA:   3'- aaCGUa--CGaGCGG-GGuGCaCCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 107595 0.68 0.496858
Target:  5'- -cGCcaaGCUgGCCCCGcCG-GcGCCGCCg -3'
miRNA:   3'- aaCGua-CGAgCGGGGU-GCaC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 107482 0.68 0.478158
Target:  5'- -aGCGcGCUgccgcUGCCCC-CGUcGCCGCCg -3'
miRNA:   3'- aaCGUaCGA-----GCGGGGuGCAcCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 107101 0.7 0.415659
Target:  5'- -cGCGUGCUCuggGCgCCGCccGaGCCGCCg -3'
miRNA:   3'- aaCGUACGAG---CGgGGUGcaC-CGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 106803 0.66 0.634531
Target:  5'- -gGCgGUGCUCgucgggGCCCCGC-UGGUgauCGCCa -3'
miRNA:   3'- aaCG-UACGAG------CGGGGUGcACCG---GCGG- -5'
29515 3' -61.4 NC_006151.1 + 106208 0.72 0.30006
Target:  5'- gUGCG-GCUCGCCCUccccgaccugAUgGUGGCCGCg -3'
miRNA:   3'- aACGUaCGAGCGGGG----------UG-CACCGGCGg -5'
29515 3' -61.4 NC_006151.1 + 105552 0.67 0.57451
Target:  5'- cUGCG-GCacgaCGCCCUGCGcgcgcuggcGGCCGCCu -3'
miRNA:   3'- aACGUaCGa---GCGGGGUGCa--------CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 104983 0.66 0.64457
Target:  5'- -cGCcgGcCUCGCUCaacauCGaccgGGCCGCCu -3'
miRNA:   3'- aaCGuaC-GAGCGGGgu---GCa---CCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 104410 0.74 0.232201
Target:  5'- -gGCGUGCUgG-CCCGCGccGCCGCCg -3'
miRNA:   3'- aaCGUACGAgCgGGGUGCacCGGCGG- -5'
29515 3' -61.4 NC_006151.1 + 103472 0.67 0.584453
Target:  5'- -gGCAcggUGCUCGCggcgcuguggCgCCugGUGGCgCGCUa -3'
miRNA:   3'- aaCGU---ACGAGCG----------G-GGugCACCG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.