miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 42058 0.66 0.996977
Target:  5'- uGAA-----GGGGCGGGGCUa----- -3'
miRNA:   3'- gCUUuuuucCCCCGCCCCGAauuucc -5'
29520 3' -50.1 NC_006151.1 + 3821 0.66 0.996977
Target:  5'- uGGAcuu-GGugcuGGCGGGGCUgGAGGGc -3'
miRNA:   3'- gCUUuuuuCCc---CCGCCCCGAaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 43224 0.66 0.996977
Target:  5'- -----cGGGGGGGaaaaGGGGCgacaccGGGGa -3'
miRNA:   3'- gcuuuuUUCCCCCg---CCCCGaau---UUCC- -5'
29520 3' -50.1 NC_006151.1 + 27324 0.66 0.996822
Target:  5'- gGggGAcGGGGGGCugcuccccgggaccGGGGUcgUGGgccGGGg -3'
miRNA:   3'- gCuuUUuUCCCCCG--------------CCCCGa-AUU---UCC- -5'
29520 3' -50.1 NC_006151.1 + 49740 0.66 0.996433
Target:  5'- gCGAAgacgGAGAGGGGGacguGGaagacGGCgagGAGGGg -3'
miRNA:   3'- -GCUU----UUUUCCCCCg---CC-----CCGaa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 75311 0.66 0.996433
Target:  5'- gGAAGGAGGGGuGGCagaGGGugcccauggcguGCUcGAAGGu -3'
miRNA:   3'- gCUUUUUUCCC-CCG---CCC------------CGAaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 34653 0.66 0.996433
Target:  5'- gCGGGAGGGucucGGGGGUcucaGGGGuCUcgagGAGGGg -3'
miRNA:   3'- -GCUUUUUU----CCCCCG----CCCC-GAa---UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 44337 0.66 0.99581
Target:  5'- gGAGAGGAGGgccgcggacGGGUGGgacGGCgggggAGAGGg -3'
miRNA:   3'- gCUUUUUUCC---------CCCGCC---CCGaa---UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10231 0.66 0.99581
Target:  5'- gCGGAcgcGGAGGGGGGCGaGGGg------- -3'
miRNA:   3'- -GCUU---UUUUCCCCCGC-CCCgaauuucc -5'
29520 3' -50.1 NC_006151.1 + 8602 0.66 0.99581
Target:  5'- gCGAGuau-GGGGGCcGGuGCgggugUGAGGGu -3'
miRNA:   3'- -GCUUuuuuCCCCCGcCC-CGa----AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 111667 0.66 0.99581
Target:  5'- gCGGcc-AGGGGGGCGucggcGGGCcgGAAGa -3'
miRNA:   3'- -GCUuuuUUCCCCCGC-----CCCGaaUUUCc -5'
29520 3' -50.1 NC_006151.1 + 28231 0.66 0.99581
Target:  5'- -----cGAGGGGGCcGGGCcgAcGGGc -3'
miRNA:   3'- gcuuuuUUCCCCCGcCCCGaaUuUCC- -5'
29520 3' -50.1 NC_006151.1 + 127921 0.66 0.995743
Target:  5'- uCGggGAgcGGGGGCGgcgagacGGGCac--GGGc -3'
miRNA:   3'- -GCuuUUuuCCCCCGC-------CCCGaauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 30745 0.66 0.995101
Target:  5'- cCGGAGugccGcGGGCGGGGCg--GGGGc -3'
miRNA:   3'- -GCUUUuuucC-CCCGCCCCGaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 27302 0.66 0.995101
Target:  5'- ------uGGGGGGCGuGGGggUcGAGGc -3'
miRNA:   3'- gcuuuuuUCCCCCGC-CCCgaAuUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10092 0.66 0.995101
Target:  5'- gCGGAGGAAGGcGGGUGcGGa--GGAGGa -3'
miRNA:   3'- -GCUUUUUUCC-CCCGCcCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 117772 0.66 0.994298
Target:  5'- cCGAGGuauAGGcuccGGGCGGGGCg------ -3'
miRNA:   3'- -GCUUUuu-UCC----CCCGCCCCGaauuucc -5'
29520 3' -50.1 NC_006151.1 + 73024 0.66 0.994298
Target:  5'- gCGAGGcccAGGGauuGGCGGuGGCgcggUGGGGGu -3'
miRNA:   3'- -GCUUUuu-UCCC---CCGCC-CCGa---AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 45027 0.66 0.994298
Target:  5'- aUGAGAAGcgaauGGGGGaagcguggGGGGUgUGGGGGg -3'
miRNA:   3'- -GCUUUUUu----CCCCCg-------CCCCGaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 30693 0.66 0.994298
Target:  5'- gCGGGcgGGGGGGuGuCGGGGCc---GGGu -3'
miRNA:   3'- -GCUUuuUUCCCC-C-GCCCCGaauuUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.