Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29520 | 5' | -56.3 | NC_006151.1 | + | 38008 | 0.66 | 0.86475 |
Target: 5'- aGCGccUGCu--GCCCUGCCCgCUCc -3' miRNA: 3'- aUGUaaACGuauCGGGGCGGGgGAGu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 121465 | 0.66 | 0.856946 |
Target: 5'- aGCugggggGCA-AGCgCCCGCCCCCg-- -3' miRNA: 3'- aUGuaaa--CGUaUCG-GGGCGGGGGagu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 58942 | 0.66 | 0.84893 |
Target: 5'- aGCGcc-GCAaAGUCCacgGCCCCCUCGg -3' miRNA: 3'- aUGUaaaCGUaUCGGGg--CGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 97706 | 0.66 | 0.84893 |
Target: 5'- uUGCGUca-CGUGGCCCaggaGCCCCC-CGa -3' miRNA: 3'- -AUGUAaacGUAUCGGGg---CGGGGGaGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 89345 | 0.66 | 0.84893 |
Target: 5'- gGCGcgUGCGaaUGGCCCCccGUCCCCcCAu -3' miRNA: 3'- aUGUaaACGU--AUCGGGG--CGGGGGaGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 108434 | 0.66 | 0.84893 |
Target: 5'- ------gGCGggAGCCgccuccccgggCCGCCCCCUCGa -3' miRNA: 3'- auguaaaCGUa-UCGG-----------GGCGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 48766 | 0.66 | 0.848117 |
Target: 5'- cACGgggGCcgAcgccuccGCCCCGCCCCC-CGa -3' miRNA: 3'- aUGUaaaCGuaU-------CGGGGCGGGGGaGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 38694 | 0.66 | 0.840709 |
Target: 5'- ------cGCA-AGCgCCGCUCCCUCGg -3' miRNA: 3'- auguaaaCGUaUCGgGGCGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 118332 | 0.66 | 0.832289 |
Target: 5'- aGCA---GCGccGCgCCCGCCCUCUCGc -3' miRNA: 3'- aUGUaaaCGUauCG-GGGCGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 99144 | 0.66 | 0.823679 |
Target: 5'- cGCAggccgUGCAcgUGGCCgCCGCCgcggaCCUCGa -3' miRNA: 3'- aUGUaa---ACGU--AUCGG-GGCGGg----GGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 118684 | 0.66 | 0.823679 |
Target: 5'- --aGUUUGUGUA-CCCgCGCCCCUUCu -3' miRNA: 3'- augUAAACGUAUcGGG-GCGGGGGAGu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 40404 | 0.67 | 0.805922 |
Target: 5'- cUGCGUccGCGgcggcGGCCUCgGUCCCCUCGg -3' miRNA: 3'- -AUGUAaaCGUa----UCGGGG-CGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 344 | 0.67 | 0.805922 |
Target: 5'- -----cUGCAUAaCCCCucCCCCCUCAu -3' miRNA: 3'- auguaaACGUAUcGGGGc-GGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 12906 | 0.67 | 0.796793 |
Target: 5'- ------cGCu---CCCCGCCCCCUCu -3' miRNA: 3'- auguaaaCGuaucGGGGCGGGGGAGu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 8360 | 0.67 | 0.796793 |
Target: 5'- cGCGgagGCGcgaGGcCCCCGCCCCCg-- -3' miRNA: 3'- aUGUaaaCGUa--UC-GGGGCGGGGGagu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 11928 | 0.67 | 0.796793 |
Target: 5'- ------cGCGccGCCgCCGCCUCCUCAu -3' miRNA: 3'- auguaaaCGUauCGG-GGCGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 18439 | 0.67 | 0.796793 |
Target: 5'- gGCGg--GCGUcG-CCCGCCUCCUCGu -3' miRNA: 3'- aUGUaaaCGUAuCgGGGCGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 36750 | 0.67 | 0.787507 |
Target: 5'- cGCuug-GCGcccggAGCCCCGUCUCCUCc -3' miRNA: 3'- aUGuaaaCGUa----UCGGGGCGGGGGAGu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 91801 | 0.67 | 0.778076 |
Target: 5'- uUAUAUgcGCGggauGCCCCGCCCCg--- -3' miRNA: 3'- -AUGUAaaCGUau--CGGGGCGGGGgagu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 7004 | 0.67 | 0.778076 |
Target: 5'- cUAC-UUUGCAU-GUCCgGCCCCCg-- -3' miRNA: 3'- -AUGuAAACGUAuCGGGgCGGGGGagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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