miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 26302 0.65 0.704084
Target:  5'- gGGGgGGgUGGggggaggaaagaacAGCGCGgGGcgagGCCCGCc -3'
miRNA:   3'- gUCCgUCgACU--------------UCGCGCgCC----UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 7762 0.65 0.703104
Target:  5'- gGGGCGGgaGAaccGGacccgaaccucgaGCcCGGACCCGCc -3'
miRNA:   3'- gUCCGUCgaCU---UCg------------CGcGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 100081 0.66 0.697218
Target:  5'- gAGGU-GCUcGAGGCGC-CGGcGCCgGCg -3'
miRNA:   3'- gUCCGuCGA-CUUCGCGcGCC-UGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 13416 0.66 0.697218
Target:  5'- gGGGgAGCcgGGccCGCGUccccgGGGCCCGCa -3'
miRNA:   3'- gUCCgUCGa-CUucGCGCG-----CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 38684 0.66 0.697218
Target:  5'- gGGGCcccGGCgcAAGCGcCGCucccucggacucGGGCCCGCu -3'
miRNA:   3'- gUCCG---UCGacUUCGC-GCG------------CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 47292 0.66 0.697218
Target:  5'- -cGGCuGCUGugauggguGGGCggaGCGCGGACCgGg -3'
miRNA:   3'- guCCGuCGAC--------UUCG---CGCGCCUGGgCg -5'
29526 3' -60.8 NC_006151.1 + 77522 0.66 0.697218
Target:  5'- -uGGCGcGCcucgGccGCGCGUGGGccgcCCCGCa -3'
miRNA:   3'- guCCGU-CGa---CuuCGCGCGCCU----GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 82134 0.66 0.697218
Target:  5'- --aGCGGCcc--GCGgGCGGGCCCGg -3'
miRNA:   3'- gucCGUCGacuuCGCgCGCCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 100803 0.66 0.697218
Target:  5'- gAGGUGGCgGGcgacGGCGagGCGGGCCC-Cg -3'
miRNA:   3'- gUCCGUCGaCU----UCGCg-CGCCUGGGcG- -5'
29526 3' -60.8 NC_006151.1 + 105267 0.66 0.697218
Target:  5'- gAGGCcuGGgaGGAcuuugggcGCGCGCGcGGCCgCGCc -3'
miRNA:   3'- gUCCG--UCgaCUU--------CGCGCGC-CUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 128055 0.66 0.697218
Target:  5'- -cGGCAGCggcgGcuGCGCGgGGGCgaCCGa -3'
miRNA:   3'- guCCGUCGa---CuuCGCGCgCCUG--GGCg -5'
29526 3' -60.8 NC_006151.1 + 135488 0.66 0.697218
Target:  5'- gCGGGCcaGGC---GGCGCGCGGcCUCGg -3'
miRNA:   3'- -GUCCG--UCGacuUCGCGCGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 29441 0.66 0.696235
Target:  5'- gGGGCGGCggggagaGggGaCGCggagggaGCGGGCgCGCc -3'
miRNA:   3'- gUCCGUCGa------CuuC-GCG-------CGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 12763 0.66 0.696235
Target:  5'- aGGGCuGGCUcGAggccAGCGCGCccuuuccucucccGGcgcGCCCGCu -3'
miRNA:   3'- gUCCG-UCGA-CU----UCGCGCG-------------CC---UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 2740 0.66 0.694268
Target:  5'- gCAGGCcgggcccacgauggAGCUaGAguccagcacGGcCGCGCGGAgCUCGCg -3'
miRNA:   3'- -GUCCG--------------UCGA-CU---------UC-GCGCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 76719 0.66 0.694268
Target:  5'- -cGGCcGCcuuuuaaugcaugaUGGAGCGCGCGuACgCGCg -3'
miRNA:   3'- guCCGuCG--------------ACUUCGCGCGCcUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 88196 0.66 0.688354
Target:  5'- -cGGCGGCguggucggaccaggcGAGGCGCGCcuccggGGGCaCGCa -3'
miRNA:   3'- guCCGUCGa--------------CUUCGCGCG------CCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 73590 0.66 0.687367
Target:  5'- aGGGCgaAGCcGggGUGCaGCuGGCgCCGCa -3'
miRNA:   3'- gUCCG--UCGaCuuCGCG-CGcCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 40143 0.66 0.687367
Target:  5'- -cGGCGGCgacGGccGGCccCGCGG-CCCGCu -3'
miRNA:   3'- guCCGUCGa--CU--UCGc-GCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 131121 0.66 0.687367
Target:  5'- --cGCGGCgcggGAGGC-CGCGG-CgCCGCg -3'
miRNA:   3'- gucCGUCGa---CUUCGcGCGCCuG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.