miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 3' -55.4 NC_006151.1 + 38189 0.66 0.925079
Target:  5'- gGCGCCGCU----GGUGCGCUacagCGUGGa -3'
miRNA:   3'- aCGUGGUGGagguCUACGUGA----GCACC- -5'
29528 3' -55.4 NC_006151.1 + 22045 0.66 0.925079
Target:  5'- gUGCGCgCACCcgUCCGcGAUGCGgUaccaggccaCGUGGg -3'
miRNA:   3'- -ACGUG-GUGG--AGGU-CUACGUgA---------GCACC- -5'
29528 3' -55.4 NC_006151.1 + 87593 0.66 0.925079
Target:  5'- gGCACCAUCgacgCCAGcucgGCcGC-CGUGGc -3'
miRNA:   3'- aCGUGGUGGa---GGUCua--CG-UGaGCACC- -5'
29528 3' -55.4 NC_006151.1 + 137823 0.66 0.919511
Target:  5'- aUGgGCCcguACCUCCAGGacuuCACcuUCGUGGa -3'
miRNA:   3'- -ACgUGG---UGGAGGUCUac--GUG--AGCACC- -5'
29528 3' -55.4 NC_006151.1 + 108747 0.66 0.919511
Target:  5'- gGC-CCGgCUgCGGAUGCGagcCGUGGa -3'
miRNA:   3'- aCGuGGUgGAgGUCUACGUga-GCACC- -5'
29528 3' -55.4 NC_006151.1 + 19287 0.66 0.919511
Target:  5'- gGC-CCACCggggCCAGcgGCGCgggCGgccGGu -3'
miRNA:   3'- aCGuGGUGGa---GGUCuaCGUGa--GCa--CC- -5'
29528 3' -55.4 NC_006151.1 + 65514 0.66 0.918941
Target:  5'- cGCGCCuCCUCCGcGGccaGCAgcgucaugacggcCUCGUGGc -3'
miRNA:   3'- aCGUGGuGGAGGU-CUa--CGU-------------GAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 5703 0.66 0.9137
Target:  5'- cUGCgGCCACCgcugCUGGcUGUGCUgGUGGc -3'
miRNA:   3'- -ACG-UGGUGGa---GGUCuACGUGAgCACC- -5'
29528 3' -55.4 NC_006151.1 + 97497 0.66 0.9137
Target:  5'- cGCAgCGCCUCgCGGcggugGCGCUgCGUGu -3'
miRNA:   3'- aCGUgGUGGAG-GUCua---CGUGA-GCACc -5'
29528 3' -55.4 NC_006151.1 + 55126 0.66 0.9137
Target:  5'- aUGCGCCACaucggcgacaUCaCGGAgacggUGCGCUCGUa- -3'
miRNA:   3'- -ACGUGGUGg---------AG-GUCU-----ACGUGAGCAcc -5'
29528 3' -55.4 NC_006151.1 + 84959 0.66 0.9137
Target:  5'- -aCGCCACgCUCCAGGccaCGCUCGUcgcGGa -3'
miRNA:   3'- acGUGGUG-GAGGUCUac-GUGAGCA---CC- -5'
29528 3' -55.4 NC_006151.1 + 112237 0.66 0.9137
Target:  5'- cGuCGCCGCCgCCAG--GCGCUgcgUGUGGg -3'
miRNA:   3'- aC-GUGGUGGaGGUCuaCGUGA---GCACC- -5'
29528 3' -55.4 NC_006151.1 + 61629 0.66 0.913106
Target:  5'- cGCucaacgaCACCUCCGGcggcGUGUggacgcgccagccGCUCGUGGc -3'
miRNA:   3'- aCGug-----GUGGAGGUC----UACG-------------UGAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 75520 0.66 0.907649
Target:  5'- uUGC-CCACCagCGGGUacgGCACcugCGUGGc -3'
miRNA:   3'- -ACGuGGUGGagGUCUA---CGUGa--GCACC- -5'
29528 3' -55.4 NC_006151.1 + 48072 0.66 0.907649
Target:  5'- cGCGCCgaaaaaggauacACCagCCGcGAUGUcgccGCUCGUGGc -3'
miRNA:   3'- aCGUGG------------UGGa-GGU-CUACG----UGAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 85623 0.66 0.907649
Target:  5'- cGCGCCGCCgCCGcGcgGCGCcagCG-GGg -3'
miRNA:   3'- aCGUGGUGGaGGU-CuaCGUGa--GCaCC- -5'
29528 3' -55.4 NC_006151.1 + 119861 0.66 0.907649
Target:  5'- cGgACCGCUUCguGcgcaCGCUCGUGGa -3'
miRNA:   3'- aCgUGGUGGAGguCuac-GUGAGCACC- -5'
29528 3' -55.4 NC_006151.1 + 114132 0.66 0.901358
Target:  5'- gUGCGCCGCCgCCgAGccGCGgCUCG-GGc -3'
miRNA:   3'- -ACGUGGUGGaGG-UCuaCGU-GAGCaCC- -5'
29528 3' -55.4 NC_006151.1 + 58820 0.66 0.900715
Target:  5'- cGCGCCgGCC-CCgucgcggcacagcAGGUGCGCcagcgCGUGGa -3'
miRNA:   3'- aCGUGG-UGGaGG-------------UCUACGUGa----GCACC- -5'
29528 3' -55.4 NC_006151.1 + 123012 0.67 0.888069
Target:  5'- cGCGCCcCCgCCGGcgGaCGC-CGUGGc -3'
miRNA:   3'- aCGUGGuGGaGGUCuaC-GUGaGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.