miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29528 5' -67.5 NC_006151.1 + 100287 0.66 0.422535
Target:  5'- cCGCGggcgcacggccuCCGUCUUCGCGCccGGGGaGgGUGg -3'
miRNA:   3'- -GCGC------------GGCGGGAGCGCG--CCCC-CgCACa -5'
29528 5' -67.5 NC_006151.1 + 66561 0.66 0.422535
Target:  5'- cCGCGCCGCCguggacccggcgCUCGCGCGcGcGGCc--- -3'
miRNA:   3'- -GCGCGGCGG------------GAGCGCGCcC-CCGcaca -5'
29528 5' -67.5 NC_006151.1 + 89722 0.66 0.422535
Target:  5'- gGCGCCGgCCgcggcCGCgGUGGuGGGCGa-- -3'
miRNA:   3'- gCGCGGCgGGa----GCG-CGCC-CCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 78509 0.66 0.421717
Target:  5'- gGUGCaCGCCCcCGCgaucgcggacccgGCGGGGGCc--- -3'
miRNA:   3'- gCGCG-GCGGGaGCG-------------CGCCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 126045 0.66 0.417642
Target:  5'- gGCGCCGCCgUCgGCaaggugguccuggguGCcacGGGGGcCGUGa -3'
miRNA:   3'- gCGCGGCGGgAG-CG---------------CG---CCCCC-GCACa -5'
29528 5' -67.5 NC_006151.1 + 75142 0.66 0.414399
Target:  5'- gGCGCgGCCCa-GCGCGGGcGCa--- -3'
miRNA:   3'- gCGCGgCGGGagCGCGCCCcCGcaca -5'
29528 5' -67.5 NC_006151.1 + 58330 0.66 0.414399
Target:  5'- gCGCGCCGgCCUC-CGCGuaGGCGc-- -3'
miRNA:   3'- -GCGCGGCgGGAGcGCGCccCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 86087 0.66 0.414399
Target:  5'- gCGCGCCGCCgC-CGCcauGGGGCccGUGUa -3'
miRNA:   3'- -GCGCGGCGG-GaGCGcgcCCCCG--CACA- -5'
29528 5' -67.5 NC_006151.1 + 98199 0.66 0.414399
Target:  5'- uCGCGCCGCgCggggucgagUGCGCGGcGGCGc-- -3'
miRNA:   3'- -GCGCGGCGgGa--------GCGCGCCcCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 139666 0.66 0.406359
Target:  5'- gCGCGCCGCCCgacaggcccugCGgcaGCGGcGGCGg-- -3'
miRNA:   3'- -GCGCGGCGGGa----------GCg--CGCCcCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 121911 0.66 0.398418
Target:  5'- aCGCGCgGgCCgagggggaccgCGUGCuGGGGGCGcUGg -3'
miRNA:   3'- -GCGCGgCgGGa----------GCGCG-CCCCCGC-ACa -5'
29528 5' -67.5 NC_006151.1 + 125533 0.66 0.398418
Target:  5'- uCGCGgUGCgUggaggUGCGCGGcGGCGUGUa -3'
miRNA:   3'- -GCGCgGCGgGa----GCGCGCCcCCGCACA- -5'
29528 5' -67.5 NC_006151.1 + 127241 0.66 0.398418
Target:  5'- aCGCGCCaGCUCUugcggcgcgaCGCGCGGuGGCcgGUGa -3'
miRNA:   3'- -GCGCGG-CGGGA----------GCGCGCCcCCG--CACa -5'
29528 5' -67.5 NC_006151.1 + 57499 0.66 0.398418
Target:  5'- aCGCGCaCGCgCUCGgcCGCGGcGGCGg-- -3'
miRNA:   3'- -GCGCG-GCGgGAGC--GCGCCcCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 81227 0.66 0.396056
Target:  5'- gCGCGUgaacacgaagcuggCGCCCcCGCGCaGGGGCa--- -3'
miRNA:   3'- -GCGCG--------------GCGGGaGCGCGcCCCCGcaca -5'
29528 5' -67.5 NC_006151.1 + 106134 0.66 0.390578
Target:  5'- cCGUGCuggccacgaCGCUCUCGCGCaccuucGGGGCGcUGg -3'
miRNA:   3'- -GCGCG---------GCGGGAGCGCGc-----CCCCGC-ACa -5'
29528 5' -67.5 NC_006151.1 + 60089 0.66 0.390578
Target:  5'- gCGCGCCGCCgCgaaCGC-CGGGcGGCa--- -3'
miRNA:   3'- -GCGCGGCGG-Ga--GCGcGCCC-CCGcaca -5'
29528 5' -67.5 NC_006151.1 + 9043 0.66 0.390578
Target:  5'- cCGgGgCGCCC-CGCGUgcuccGGGGGCGc-- -3'
miRNA:   3'- -GCgCgGCGGGaGCGCG-----CCCCCGCaca -5'
29528 5' -67.5 NC_006151.1 + 134316 0.66 0.390578
Target:  5'- aCGcCGCUGCgCCUCGCGCcGGGcaucgccacGGaCGUGc -3'
miRNA:   3'- -GC-GCGGCG-GGAGCGCG-CCC---------CC-GCACa -5'
29528 5' -67.5 NC_006151.1 + 128059 0.66 0.390578
Target:  5'- aGCGgCGgCU--GCGCGGGGGCGa-- -3'
miRNA:   3'- gCGCgGCgGGagCGCGCCCCCGCaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.