miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 3' -59.2 NC_006151.1 + 19403 0.66 0.81899
Target:  5'- cGGACGGUcagGUGCGgcgaccaccgcuccgGggugACGAugGGCGGCu -3'
miRNA:   3'- -CCUGCCA---CGCGCa--------------Ca---UGCU--CCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 84019 0.66 0.818156
Target:  5'- ---gGGUGCgccgccccgacuGCGUGUGCGuGGuGCGGCu -3'
miRNA:   3'- ccugCCACG------------CGCACAUGC-UC-CGCCGc -5'
29529 3' -59.2 NC_006151.1 + 18820 0.66 0.818156
Target:  5'- cGGccGCGGUGgcgacgaGCGUGUAgucCcAGGUGGCGa -3'
miRNA:   3'- -CC--UGCCACg------CGCACAU---GcUCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 118170 0.66 0.818156
Target:  5'- --cUGGUGCGCGgccugaccGU-CGAGGcCGGCu -3'
miRNA:   3'- ccuGCCACGCGCa-------CAuGCUCC-GCCGc -5'
29529 3' -59.2 NC_006151.1 + 123242 0.66 0.818156
Target:  5'- -cACGGcGCGCGUucUGCGAGGCcGCc -3'
miRNA:   3'- ccUGCCaCGCGCAc-AUGCUCCGcCGc -5'
29529 3' -59.2 NC_006151.1 + 58444 0.66 0.818156
Target:  5'- cGGugGcGUGCGCGcGcgcgGCGucGCGGUc -3'
miRNA:   3'- -CCugC-CACGCGCaCa---UGCucCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 132041 0.66 0.818156
Target:  5'- cGGCGGcGCGCGgcagcgcgGCGGagaacGGCGGCu -3'
miRNA:   3'- cCUGCCaCGCGCaca-----UGCU-----CCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 24223 0.66 0.809727
Target:  5'- -cGCGcGUacUGCGUGUACGGcuGGCGGUGg -3'
miRNA:   3'- ccUGC-CAc-GCGCACAUGCU--CCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 98200 0.66 0.809727
Target:  5'- -cGCGccGCGCGgggucgaGUGCGcGGCGGCGc -3'
miRNA:   3'- ccUGCcaCGCGCa------CAUGCuCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 103471 0.66 0.809727
Target:  5'- gGGcACGGUGCucgcgGCGcUGUgGCGccuGGUGGCGc -3'
miRNA:   3'- -CC-UGCCACG-----CGC-ACA-UGCu--CCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 27085 0.66 0.809727
Target:  5'- aGGGCgcggcgcagGGcGCGCGUGUcgcccgucACGucGGCGGCc -3'
miRNA:   3'- -CCUG---------CCaCGCGCACA--------UGCu-CCGCCGc -5'
29529 3' -59.2 NC_006151.1 + 27302 0.66 0.809727
Target:  5'- uGGgGG-GCGUGgggGU-CGAGGCGGgGg -3'
miRNA:   3'- cCUgCCaCGCGCa--CAuGCUCCGCCgC- -5'
29529 3' -59.2 NC_006151.1 + 89173 0.66 0.809727
Target:  5'- aGGCGG-GCGCGgggGUcgGGGGCGGa- -3'
miRNA:   3'- cCUGCCaCGCGCa--CAugCUCCGCCgc -5'
29529 3' -59.2 NC_006151.1 + 95619 0.66 0.809727
Target:  5'- cGGGCccGUGCaGCGaggccagGUGCGAGGC-GCGg -3'
miRNA:   3'- -CCUGc-CACG-CGCa------CAUGCUCCGcCGC- -5'
29529 3' -59.2 NC_006151.1 + 96749 0.66 0.809727
Target:  5'- cGACGGaggccaugGCgGCGUGUGCucgacacgggGAGGUGaGCGg -3'
miRNA:   3'- cCUGCCa-------CG-CGCACAUG----------CUCCGC-CGC- -5'
29529 3' -59.2 NC_006151.1 + 100220 0.66 0.809727
Target:  5'- cGGccGCGG-GCGcCGUGgccgagcGCGuGGUGGCGc -3'
miRNA:   3'- -CC--UGCCaCGC-GCACa------UGCuCCGCCGC- -5'
29529 3' -59.2 NC_006151.1 + 104667 0.66 0.809727
Target:  5'- -cGCGGcGCGCGcGcucgACGAGGgGGUGc -3'
miRNA:   3'- ccUGCCaCGCGCaCa---UGCUCCgCCGC- -5'
29529 3' -59.2 NC_006151.1 + 122038 0.66 0.809727
Target:  5'- cGGCGG-GCGCGUGgagACGGaGCuGCa -3'
miRNA:   3'- cCUGCCaCGCGCACa--UGCUcCGcCGc -5'
29529 3' -59.2 NC_006151.1 + 122786 0.66 0.808022
Target:  5'- uGGGCGGcUGCGCGgccucgcccgACGAGcGCcucgaGGCGc -3'
miRNA:   3'- -CCUGCC-ACGCGCaca-------UGCUC-CG-----CCGC- -5'
29529 3' -59.2 NC_006151.1 + 8080 0.66 0.801147
Target:  5'- cGACGG-G-GCGUG-GCGGGGCguGGCa -3'
miRNA:   3'- cCUGCCaCgCGCACaUGCUCCG--CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.