miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29529 5' -58.1 NC_006151.1 + 102116 0.66 0.820111
Target:  5'- gUGCGCGGGccggagccuGUUCcccGGGCGCGC-CGGg -3'
miRNA:   3'- -AUGCGCCU---------CGAGua-CCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 48948 0.66 0.820111
Target:  5'- cGCGCGcGAGgaCGuguucgccUGGACGCGcCUCa- -3'
miRNA:   3'- aUGCGC-CUCgaGU--------ACCUGCGC-GAGcu -5'
29529 5' -58.1 NC_006151.1 + 99698 0.66 0.820111
Target:  5'- gGCGCcggGGAGaCgccCAUGGAgGCGC-CGAc -3'
miRNA:   3'- aUGCG---CCUC-Ga--GUACCUgCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 83148 0.66 0.814956
Target:  5'- cGCGCcaaagaggguguccuGGAGCUCggGGucguCGCGCgggCGGc -3'
miRNA:   3'- aUGCG---------------CCUCGAGuaCCu---GCGCGa--GCU- -5'
29529 5' -58.1 NC_006151.1 + 138724 0.66 0.811487
Target:  5'- cGCGCGcGGgUCGUGuACGCGCgccgCGAc -3'
miRNA:   3'- aUGCGCcUCgAGUACcUGCGCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 100604 0.66 0.811487
Target:  5'- -cCGUGGAGCgcuUCcUGG-CGCGCUgGGa -3'
miRNA:   3'- auGCGCCUCG---AGuACCuGCGCGAgCU- -5'
29529 5' -58.1 NC_006151.1 + 111549 0.66 0.811487
Target:  5'- gGCGCGcAGCggccgCGUGuccacgcccccGGCGCGCUUGAu -3'
miRNA:   3'- aUGCGCcUCGa----GUAC-----------CUGCGCGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 55831 0.66 0.811487
Target:  5'- gGCGUGGuGUUUAagaaGACGCGcCUCGAg -3'
miRNA:   3'- aUGCGCCuCGAGUac--CUGCGC-GAGCU- -5'
29529 5' -58.1 NC_006151.1 + 78812 0.66 0.802701
Target:  5'- -cCGCGGGGCccaguaccuguuUCAgcuguuUGGGCGCGCcUGAc -3'
miRNA:   3'- auGCGCCUCG------------AGU------ACCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 105158 0.66 0.802701
Target:  5'- -cCGCGG-GCcCAUGGACgaguucgccgaGCGCaUCGAg -3'
miRNA:   3'- auGCGCCuCGaGUACCUG-----------CGCG-AGCU- -5'
29529 5' -58.1 NC_006151.1 + 110790 0.66 0.802701
Target:  5'- cGCGCGGGGCUa--GGGCGgGgggCGAg -3'
miRNA:   3'- aUGCGCCUCGAguaCCUGCgCga-GCU- -5'
29529 5' -58.1 NC_006151.1 + 139203 0.66 0.793762
Target:  5'- gGCGCuGGAGCUCcUGGcgGCGaCGCUg-- -3'
miRNA:   3'- aUGCG-CCUCGAGuACC--UGC-GCGAgcu -5'
29529 5' -58.1 NC_006151.1 + 52964 0.66 0.793762
Target:  5'- gUGCGCGuGcaggcGGCUCAUGuACGCGCU-GAc -3'
miRNA:   3'- -AUGCGC-C-----UCGAGUACcUGCGCGAgCU- -5'
29529 5' -58.1 NC_006151.1 + 102476 0.66 0.793762
Target:  5'- cUACGCGcAGCucucggcgugcuUCAUGGACGcCGCggcgCGGg -3'
miRNA:   3'- -AUGCGCcUCG------------AGUACCUGC-GCGa---GCU- -5'
29529 5' -58.1 NC_006151.1 + 33945 0.66 0.793762
Target:  5'- cGCGCcccgGGGGCUCGgggcgGGACGCgGCgcccgcgCGGg -3'
miRNA:   3'- aUGCG----CCUCGAGUa----CCUGCG-CGa------GCU- -5'
29529 5' -58.1 NC_006151.1 + 96590 0.66 0.793762
Target:  5'- gGCGCGaGGCgccgggCGcGGGCGCGC-CGAc -3'
miRNA:   3'- aUGCGCcUCGa-----GUaCCUGCGCGaGCU- -5'
29529 5' -58.1 NC_006151.1 + 113108 0.66 0.793762
Target:  5'- gGgGCGGGGC-CGcGGACGCGgaCGc -3'
miRNA:   3'- aUgCGCCUCGaGUaCCUGCGCgaGCu -5'
29529 5' -58.1 NC_006151.1 + 119595 0.66 0.793762
Target:  5'- cGCGCcgacGGAGCccCAUGGGCGUcUUCGGg -3'
miRNA:   3'- aUGCG----CCUCGa-GUACCUGCGcGAGCU- -5'
29529 5' -58.1 NC_006151.1 + 17395 0.66 0.784679
Target:  5'- cACGaCGGGGCgCGUGG-CGCGCg--- -3'
miRNA:   3'- aUGC-GCCUCGaGUACCuGCGCGagcu -5'
29529 5' -58.1 NC_006151.1 + 86558 0.66 0.775461
Target:  5'- gGCGCcguuccGGcAGCUCucggcgcGGGCGCGCUcCGAg -3'
miRNA:   3'- aUGCG------CC-UCGAGua-----CCUGCGCGA-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.